Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq22136 174 2e-38 seq22430 114 1e-20 >seq22136 Length=515022 Score = 174 bits (192), Expect = 2e-38 Identities = 485/737 (66%), Gaps = 14/737 (2%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| | ||||| |||| || || ||||| ||||| || ||||| || || Sbjct 289622 ACGCCCATACGCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGG 289681 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCA 16781 || || |||||||||| | || || || | | || | || ||| | |||| Sbjct 289682 GAGATCATCTCCATGAAGTTGAACGGGTTCTTGGTGTTGTAGATCTTTCCAACG--CCCA 289739 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 ||| | | || | ||||| || || || || || || |||| | |||||||||| Sbjct 289740 ATTCCACCAGCAAACGGTCCGCCACGAACTCAATGTACTGCGACATGAGGTCGCAGTTCA 289799 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || ||||| ||| || || || || || | || ||||| || | ||||| | Sbjct 289800 TGCCAATAAGGTTTACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCAT 289859 Query 16902 CCTTAATAATA-CTAGCAA---CTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 | || || | | | |||| ||| || || || | ||||| | ||| Sbjct 289860 CACGGATGATCTCGATGATGCGCTCGCGCCTGGGTCGCTGAACC----AGATGCTGGAAC 289915 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 ||||| ||||| || || || ||||||||||| | | ||| |||||||| || || Sbjct 289916 ATCAGCACGGCGAAGTCACAGTGCAATCCCTCGTCCCGGGAGATCAGTTCGTTGGAGAAG 289975 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 |||| || |||||| || |||||||||| ||| || || | |||||| || Sbjct 289976 GTCAGGCCCGGCATCAAACCGCGTTTCTTTAGCCAGAAAATGGAGGCGAAACTGCCGCTG 290035 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 ||||| || ||||| |||| ||||| ||||| | || || || | | ||| ||| Sbjct 290036 AAGAAGATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCGGACTTG 290095 Query 17138 TTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196 | || ||||| | | |||| || || || |||| | |||||| || || Sbjct 290096 G-AGGAGATCCAGGACAGGGCCCAGTCCGCCTTGCGCTTCACCGCTGGCATCGTCTCGAT 290154 Query 17197 GGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 ||| || || | | ||| | || | || || || || ||||| || | ||| Sbjct 290155 GGCGTTGAACAGATAGTCTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACGCT 290214 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 |||||| || ||||| | |||||||||||| ||||| |||||||| ||||| ||||| || Sbjct 290215 GTACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAATCCGTAGAAGCAGCGGGCCTC 290274 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 || || || || ||| ||| || ||| | || || || || || ||||| ||| Sbjct 290275 CGTGATCTGCACCTCCTGACTGAAGCGCTCCACGAGGTTCTCATTAACAATGCCATCGGA 290334 Query 17377 CGCGGCGAAAAACGCCA 17393 |||||||| || |||| Sbjct 290335 GGCGGCGAAGAAGGCCA 290351 >seq22430 Length=315411 Score = 114 bits (126), Expect = 1e-20 Identities = 182/256 (71%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| || || | ||||||||| | || ||||||||||| | | || |||| || Sbjct 157215 TTCATGTACCGAACCTTTCCGAAAATGGCGCGTTCCTTCCATCCCATATCATGGACACCG 157156 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTA 119902 | | || ||| | || ||||| || ||||||||||| |||||| | || || Sbjct 157155 CCGATGGACCACATACAGCCCACATAGCCGTTGGGATCGCGTCCATCGAGGCTATACTTG 157096 Query 119903 TCGTTTAAGTA-GAT-ACAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTA 119960 ||| || |||| ||| || || | ||||| ||| || || || ||||||| || | Sbjct 157095 TCG-TTCAGTAGGATCGCATACTC-CAACGCCTGTTCCGGGGTGGCGGTCCATTCGAGAA 157038 Query 119961 tttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAA 120020 | ||||| ||||| ||||| |||||| | || ||||| ||||| || || |||| || | Sbjct 157037 TCTTTTTGGCCCAATACATGCGTAAGAAGCCGTGCATCTTACCCTCGCGCACCAGCTGCA 156978 Query 120021 GTTGTGCGGCGTTCCA 120036 |||||| | |||||| Sbjct 156977 ATTGTGCCGAGTTCCA 156962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517397976586920