Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq22136 123 3e-23 seq22430 111 2e-19 >seq22136 Length=515022 Score = 123 bits (136), Expect = 3e-23 Identities = 307/459 (67%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 16193 AACATTAGACACG-CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGA 16251 ||||| || |||| ||||||| || || | ||| ||||| | | ||| ||||||||||| Sbjct 289913 AACATCAG-CACGGCGAAGTCACAGTGCAATCCCTCGTCCCGGGAGATCAGTTCGTTGGA 289971 Query 16252 AAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGAC 16309 || || | || ||||| || |||||||||| |||||| || | || || || | Sbjct 289972 GAAGGTCAGGCCCGGCATCAAACCGCGTTTCTTTAGCCAGAAAATGGAGGCGAAACTGCC 290031 Query 16310 CCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCA 16369 | ||| ||| || ||||| || | ||||| ||||| | || ||| || | | || Sbjct 290032 GCTGAA--GAAGATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCG 290089 Query 16370 TCTTTATTACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGT 16428 || | || ||||| | | |||| || || || | || | |||||| Sbjct 290090 GACTTGG-AGGAGATCCAGGACAGGGCCCAGTCCGCCTTGCGCTTCACCGCTGGCATCGT 290148 Query 16429 TTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAG 16488 || ||||| || |||| | ||| | || ||| || || || || ||||| Sbjct 290149 CTCGATGGCGTTGAACAGATAGTCTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAG 290208 Query 16489 TAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCG 16548 | |||||||| || ||||| | |||||| ||||| ||||| ||||| |||||||| || Sbjct 290209 CACGCTGTACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAATCCGTAGAAGCAGCG 290268 Query 16549 AGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACC 16608 ||||||| || || || ||| || || ||| | ||||||||||| || || || Sbjct 290269 GGCCTCCGTGATCTGCACCTCCTGACTGAAGCGCTCCACGAGGTTCTCATTAACAATGCC 290328 Query 16609 GTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || || || || |||| | |||| ||||| Sbjct 290329 ATCGGAGGCGGCGAAGAAGGCCAGCACGTGCGAGATGAA 290367 >seq22430 Length=315411 Score = 111 bits (122), Expect = 2e-19 Identities = 183/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| || | |||||| || | || || ||||||||| | | || |||| || Sbjct 157215 TTCATGTACCGAACCTTTCCGAAAATGGCGCGTTCCTTCCATCCCATATCATGGACACCG 157156 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055 | | | ||| | ||| ||||| || ||||||||||| ||| || | ||||| Sbjct 157155 CCGATGGACCACATACAGCCCACATAGCCGTTGGGATCGCGTCCATCGAGGCTATACTTG 157096 Query 119056 TCGTTTAAGTA-GAT-ACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113 ||| || |||| ||| || || | ||||| |||||| || ||||||| || | Sbjct 157095 TCG-TTCAGTAGGATCGCATACTC-CAACGCCTGTTCCGGGGTGGCGGTCCATTCGAGAA 157038 Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAA 119173 | ||||| ||||| ||||| ||||| | |||||||| ||||||||| | || ||| | Sbjct 157037 TCTTTTTGGCCCAATACATGCGTAAGAAGCCGTGCATCTTACCCTCGCGCACCAGCTGCA 156978 Query 119174 GTTGTGCGGTGTTCCATAG 119192 |||||| | |||||| || Sbjct 156977 ATTGTGCCGAGTTCCACAG 156959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511268525435080