Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq22136 123 3e-23
seq22430 111 2e-19
>seq22136
Length=515022
Score = 123 bits (136), Expect = 3e-23
Identities = 307/459 (67%), Gaps = 8/459 (2%)
Strand=Plus/Plus
Query 16193 AACATTAGACACG-CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGA 16251
||||| || |||| ||||||| || || | ||| ||||| | | ||| |||||||||||
Sbjct 289913 AACATCAG-CACGGCGAAGTCACAGTGCAATCCCTCGTCCCGGGAGATCAGTTCGTTGGA 289971
Query 16252 AAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGAC 16309
|| || | || ||||| || |||||||||| |||||| || | || || || |
Sbjct 289972 GAAGGTCAGGCCCGGCATCAAACCGCGTTTCTTTAGCCAGAAAATGGAGGCGAAACTGCC 290031
Query 16310 CCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCA 16369
| ||| ||| || ||||| || | ||||| ||||| | || ||| || | | ||
Sbjct 290032 GCTGAA--GAAGATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCG 290089
Query 16370 TCTTTATTACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGT 16428
|| | || ||||| | | |||| || || || | || | ||||||
Sbjct 290090 GACTTGG-AGGAGATCCAGGACAGGGCCCAGTCCGCCTTGCGCTTCACCGCTGGCATCGT 290148
Query 16429 TTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAG 16488
|| ||||| || |||| | ||| | || ||| || || || || |||||
Sbjct 290149 CTCGATGGCGTTGAACAGATAGTCTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAG 290208
Query 16489 TAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCG 16548
| |||||||| || ||||| | |||||| ||||| ||||| ||||| |||||||| ||
Sbjct 290209 CACGCTGTACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAATCCGTAGAAGCAGCG 290268
Query 16549 AGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACC 16608
||||||| || || || ||| || || ||| | ||||||||||| || || ||
Sbjct 290269 GGCCTCCGTGATCTGCACCTCCTGACTGAAGCGCTCCACGAGGTTCTCATTAACAATGCC 290328
Query 16609 GTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647
|| || || || || |||| | |||| |||||
Sbjct 290329 ATCGGAGGCGGCGAAGAAGGCCAGCACGTGCGAGATGAA 290367
>seq22430
Length=315411
Score = 111 bits (122), Expect = 2e-19
Identities = 183/259 (71%), Gaps = 4/259 (2%)
Strand=Plus/Minus
Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995
|||||||| || | |||||| || | || || ||||||||| | | || |||| ||
Sbjct 157215 TTCATGTACCGAACCTTTCCGAAAATGGCGCGTTCCTTCCATCCCATATCATGGACACCG 157156
Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055
| | | ||| | ||| ||||| || ||||||||||| ||| || | |||||
Sbjct 157155 CCGATGGACCACATACAGCCCACATAGCCGTTGGGATCGCGTCCATCGAGGCTATACTTG 157096
Query 119056 TCGTTTAAGTA-GAT-ACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113
||| || |||| ||| || || | ||||| |||||| || ||||||| || |
Sbjct 157095 TCG-TTCAGTAGGATCGCATACTC-CAACGCCTGTTCCGGGGTGGCGGTCCATTCGAGAA 157038
Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAA 119173
| ||||| ||||| ||||| ||||| | |||||||| ||||||||| | || ||| |
Sbjct 157037 TCTTTTTGGCCCAATACATGCGTAAGAAGCCGTGCATCTTACCCTCGCGCACCAGCTGCA 156978
Query 119174 GTTGTGCGGTGTTCCATAG 119192
|||||| | |||||| ||
Sbjct 156977 ATTGTGCCGAGTTCCACAG 156959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511268525435080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |