Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq5502 89.7 4e-13 >seq5502 Length=68615 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || |||| ||||||||||||||| || ||| || | Sbjct 6274 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATTACCCTTGAGGTGGAGCCATCC 6215 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| || || || || || ||| | ||| |||||| Sbjct 6214 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 6155 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || |||||||| ||||| || || |||||| ||| | |||| ||||| Sbjct 6154 CAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCCGACTACAAC 6095 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| || |||||| |||| Sbjct 6094 ATCCAGAAGGAATCCACCCTTCACTTGGT 6066 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || || | || |||||||| ||||| |||||||| || ||| || Sbjct 7417 AAAATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATTACTTTGGAGGTGGAGCCT 7358 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | || | ||| || ||| ||||| || || | ||| ||| Sbjct 7357 TCCGATACGATCGAGAATGTAAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCAGAC 7298 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || | || |||||||| ||||| || || |||||| ||| | |||| ||| Sbjct 7297 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCCGACTAC 7238 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || ||||||||||| || |||||| |||| Sbjct 7237 AACATCCAGAAGGAATCCACCCTTCACTTGGT 7206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428216876947445