Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq22232 199 5e-46 >seq22232 Length=226448 Score = 199 bits (220), Expect = 5e-46 Identities = 493/749 (66%), Gaps = 18/749 (2%) Strand=Plus/Plus Query 145531 CCCAATTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCA 145590 |||| ||| | ||||| ||||| ||| | | || ||| | ||| | | | | || Sbjct 53680 CCCATTTAAATGGCCATGTCCATCTTGATCGTGGGGTAGGGATTATAGTCGACTATCTCA 53739 Query 145591 AAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGA 145650 |||||||| | |||||| || ||||||| |||| | | | |||| || |||| Sbjct 53740 AAGTCCTCGAAGCGGAAGTCTTCGATGTCCTGCACCTGGCGCTTGATCACCAGTTTGGGG 53799 Query 145651 AAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACG 145710 ||||| || || | | |||| || ||| | || || ||||| || || |||||| Sbjct 53800 AAGGGTCGCGGCGTACGCTTCAGTTGCTCCTTTAATGGGTCTACGTGATTCAGATAGACG 53859 Query 145711 TGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACC 145770 || | || || | ||| | |||||| || |||| || ||||| | || |||| | Sbjct 53860 TGGGTATCGCCAAACGTGTGCACGAAGTCGCCAGGCTTCAGACCCGTAACATGAGCGATC 53919 Query 145771 ATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCC 145830 |||| || || |||| |||| ||| ||||| |||||||| ||||| |||||||| | Sbjct 53920 ATGTGAGTGAGAAGGGCGTAGGAGGCGATGTTAAAGGGCACGCCCAGGCCCATGTCGGCG 53979 Query 145831 GAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC------ACGTAGAACTGGCAC 145884 | ||||||||||||||||||||| || |||| || | ||||||||||| Sbjct 53980 CTCCTCTGGTACAGCTGGCAGGAGAGTTCGCCGCGCGTCTGGGAGACGTAGAACTGCGCT 54039 Query 145885 AGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGG 145944 ||| |||||| |||||||| ||||| || | ||| | || ||||| || | | | Sbjct 54040 AGGCAGTGGCACGGCGGCAGCGCCATCTTCGGTATGTCTACTGGATTCCAAGCTGACATG 54099 Query 145945 ACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCC 146004 | | | ||| | ||| ||| ||||||| | || | | | | |||||| Sbjct 54100 ATAATGCGCCTATCCGAGGGATTCTTCTTGATGGTGTCGATTACCTGACGCAACTGGTCG 54159 Query 146005 ACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCAC 146064 | ||||| || || || || | || | ||| | || || ||||||| |||| Sbjct 54160 ATGCCCTTTCCAGTATAGTCGTCCTCGCAGGTGCCATACTCTGCGCCAAAGTGCCGCCAC 54219 Query 146065 TGGAACCCGTAGACGGGCCCCAGGTCCC------CGGGCTCCCTGTGCCCCAGCCCGGCC 146118 ||||| || || || || ||||| || | || ||||| |||||||||| | || Sbjct 54220 TGGAAACCATACACCGGGCCCAGATCGCCGACAGCGCGCTCCGTGTGCCCCAGATTGTCC 54279 Query 146119 CGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGC 146178 ||||| |||| || | ||| ||||||||| | || | | || ||| Sbjct 54280 ------AGGAACTCCCTGGTGCTGTTCCCGTCCCAGAAGTGCACTTTCTTGGCCTGCAGC 54333 Query 146179 TCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAG 146238 |||| |||||| || | |||||||||||||||||| || || | | Sbjct 54334 AGCTTGGCGTCCGTTTTGCCGGCCACAAACCAGAGCAGCTCTTCGGCCACACCGCGAAAA 54393 Query 146239 AAGACCCTCTTGGTGGTCAGCAGGGGGAA 146267 ||||| | |||||||||||| || || || Sbjct 54394 AAGACGCGCTTGGTGGTCAGTAGAGGAAA 54422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589908487968760