Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq22232 199 5e-46
>seq22232
Length=226448
Score = 199 bits (220), Expect = 5e-46
Identities = 493/749 (66%), Gaps = 18/749 (2%)
Strand=Plus/Plus
Query 145531 CCCAATTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCA 145590
|||| ||| | ||||| ||||| ||| | | || ||| | ||| | | | | ||
Sbjct 53680 CCCATTTAAATGGCCATGTCCATCTTGATCGTGGGGTAGGGATTATAGTCGACTATCTCA 53739
Query 145591 AAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGA 145650
|||||||| | |||||| || ||||||| |||| | | | |||| || ||||
Sbjct 53740 AAGTCCTCGAAGCGGAAGTCTTCGATGTCCTGCACCTGGCGCTTGATCACCAGTTTGGGG 53799
Query 145651 AAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACG 145710
||||| || || | | |||| || ||| | || || ||||| || || ||||||
Sbjct 53800 AAGGGTCGCGGCGTACGCTTCAGTTGCTCCTTTAATGGGTCTACGTGATTCAGATAGACG 53859
Query 145711 TGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACC 145770
|| | || || | ||| | |||||| || |||| || ||||| | || |||| |
Sbjct 53860 TGGGTATCGCCAAACGTGTGCACGAAGTCGCCAGGCTTCAGACCCGTAACATGAGCGATC 53919
Query 145771 ATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCC 145830
|||| || || |||| |||| ||| ||||| |||||||| ||||| |||||||| |
Sbjct 53920 ATGTGAGTGAGAAGGGCGTAGGAGGCGATGTTAAAGGGCACGCCCAGGCCCATGTCGGCG 53979
Query 145831 GAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC------ACGTAGAACTGGCAC 145884
| ||||||||||||||||||||| || |||| || | |||||||||||
Sbjct 53980 CTCCTCTGGTACAGCTGGCAGGAGAGTTCGCCGCGCGTCTGGGAGACGTAGAACTGCGCT 54039
Query 145885 AGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGG 145944
||| |||||| |||||||| ||||| || | ||| | || ||||| || | | |
Sbjct 54040 AGGCAGTGGCACGGCGGCAGCGCCATCTTCGGTATGTCTACTGGATTCCAAGCTGACATG 54099
Query 145945 ACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCC 146004
| | | ||| | ||| ||| ||||||| | || | | | | ||||||
Sbjct 54100 ATAATGCGCCTATCCGAGGGATTCTTCTTGATGGTGTCGATTACCTGACGCAACTGGTCG 54159
Query 146005 ACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCAC 146064
| ||||| || || || || | || | ||| | || || ||||||| ||||
Sbjct 54160 ATGCCCTTTCCAGTATAGTCGTCCTCGCAGGTGCCATACTCTGCGCCAAAGTGCCGCCAC 54219
Query 146065 TGGAACCCGTAGACGGGCCCCAGGTCCC------CGGGCTCCCTGTGCCCCAGCCCGGCC 146118
||||| || || || || ||||| || | || ||||| |||||||||| | ||
Sbjct 54220 TGGAAACCATACACCGGGCCCAGATCGCCGACAGCGCGCTCCGTGTGCCCCAGATTGTCC 54279
Query 146119 CGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGC 146178
||||| |||| || | ||| ||||||||| | || | | || |||
Sbjct 54280 ------AGGAACTCCCTGGTGCTGTTCCCGTCCCAGAAGTGCACTTTCTTGGCCTGCAGC 54333
Query 146179 TCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAG 146238
|||| |||||| || | |||||||||||||||||| || || | |
Sbjct 54334 AGCTTGGCGTCCGTTTTGCCGGCCACAAACCAGAGCAGCTCTTCGGCCACACCGCGAAAA 54393
Query 146239 AAGACCCTCTTGGTGGTCAGCAGGGGGAA 146267
||||| | |||||||||||| || || ||
Sbjct 54394 AAGACGCGCTTGGTGGTCAGTAGAGGAAA 54422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589908487968760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |