Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq22430 125 1e-23 >seq22430 Length=315411 Score = 125 bits (138), Expect = 1e-23 Identities = 202/288 (70%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 189449 CTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGA 189508 || |||||| || ||||| ||||| ||||| | || || || ||||| | || ||||| Sbjct 156959 CTGTGGAACTCGGCACAATTGCAGCTGGTGCGCGAGGGTAAGATGCACGGCTTCTTACGC 157018 Query 189509 ATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTAT 189568 ||||||||||| || ||||| || |||||||| || || ||| | || ||| ||| Sbjct 157019 ATGTATTGGGCCAAAAAGATTCTCGAATGGACCGCCACCCCGGAACAGGCGTTGGAGTAT 157078 Query 189569 AGTATCTATTTGAACAACAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTAGG 189627 ||| ||||| ||||||| || || || ||| ||||| ||||| || || || Sbjct 157079 GCGATCCTACTGAACGACAAGTATAGCCTCGATGG-ACGCGATCCCAACGGCTATGTGGG 157137 Query 189628 TTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTGG 189687 ||||||||||| || |||| | || |||| | ||||| ||| | | || || || Sbjct 157138 CTGTATGTGGTCCATCGGCGGTGTCCATGATATGGGATGGAAGGAACGCGCCATTTTCGG 157197 Query 189688 AAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 189735 |||| | | || ||||| ||| || | | | ||||||||||| Sbjct 157198 AAAGGTTCGGTACATGAACTATCAGGGCTGCCGGCGCAAATTTGATGT 157245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922933469652760