Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq22190 105 8e-18 seq5502 105 8e-18 seq21516 98.7 1e-15 seq21692 96.9 4e-15 seq20076 95.1 1e-14 seq4557 95.1 1e-14 seq22281 93.3 5e-14 seq22228 93.3 5e-14 seq20002 93.3 5e-14 >seq22190 Length=927835 Score = 105 bits (116), Expect = 8e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||||||||| ||| |||||| || || ||||| || | || || || | Sbjct 837740 ACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCC 837681 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||| ||||| || || | ||||||||||| | || | || ||||| Sbjct 837680 GTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTT 837621 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| |||||| || | || | | || ||| | || || || | ||||| Sbjct 837620 GTCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGAT 837561 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || || ||||| |||||||| ||||| Sbjct 837560 GGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525 Score = 84.2 bits (92), Expect = 3e-11 Identities = 149/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || |||||| || || ||||| || | || || || | Sbjct 837512 ACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCC 837453 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||| ||||| || || | ||||||||||| | || | || ||||| Sbjct 837452 GTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTT 837393 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| |||||| || | || | | || ||| | || || || | ||||| Sbjct 837392 GTCCTGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTC-AAGGTGAT 837334 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || || ||||| |||||||| ||||| Sbjct 837333 GGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298 >seq5502 Length=68615 Score = 105 bits (116), Expect = 8e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| ||||| || | || ||||||||| || |||||||||| || || || | Sbjct 6743 ACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGACAACGTACGTCC 6802 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || || ||||| || || || || | ||||||||| || | || | | |||||| Sbjct 6803 GTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGAATACCCTCCTT 6862 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || || | || | | ||||||| | || || || | || || Sbjct 6863 GTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCGACCTCAAGGGTAAT 6922 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||| || || ||||| || ||||||||||| Sbjct 6923 GGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | |||||| ||||| ||| |||||| || || || ||||| | Sbjct 5819 TCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGA 5878 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||| || | || || | |||||| || ||||| || | |||||||| || | || Sbjct 5879 CAGAGTGCGTCCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 5938 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||||||| ||| || || | || | | || || | ||| || Sbjct 5939 AATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGAC 5998 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || | |||||||| ||||||||||| Sbjct 5999 TTCCAAGGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6046 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| ||||| || || ||||| || | || || || | || || Sbjct 6066 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCA 6125 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || || || || || |||||||| || | || | | |||||||||| | Sbjct 6126 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 6185 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || || | || | | ||||||| | ||||| || | || ||||||||| Sbjct 6186 ATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCCACCTCAAGGGTAATGGTTTTG 6245 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || ||||||||||| Sbjct 6246 CCAGTCAGGGTCTTCACGAAGATTTGCAT 6274 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| ||||| || || ||||| || | || || || | || || Sbjct 6522 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCC 6581 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||| |||||||| ||||| |||||||| || | || | | |||||| ||| || Sbjct 6582 AACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCC-TG 6640 Query 43095 ATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | || | | | | ||||| | ||||| |||| ||||||||||| Sbjct 6641 AATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGAGTGATGGTTTT 6700 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| ||||||||||| Sbjct 6701 TCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| ||||| || || ||||| || | || || || | || || Sbjct 7206 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCA 7265 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || || || || || ||||||||||| | || | || |||||| ||| || Sbjct 7266 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCC-TG 7324 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | || | || | | ||| ||| | ||||| || | || ||||| || Sbjct 7325 AATCTTGGCCTTTACATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCTT 7384 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| || | ||||| |||||||| |||||||| Sbjct 7385 GCCAGTCAATGTCTTCACAAAGATCTGCATTTT 7417 >seq21516 Length=453175 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 212361 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 212420 Query 60124 TATACTACCGAGGA--TTGAATATAT 60147 ||||||| |||||| ||||| |||| Sbjct 212421 TATACTATCGAGGACCTTGAAAATAT 212446 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/108 (81%), Gaps = 6/108 (6%) Strand=Plus/Plus Query 60033 GATAACAACAAATTAA---CGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCT 60089 ||||| || ||||||| | ||| | ||| ||| |||| || | |||||| |||||| Sbjct 166096 GATAAAAAAAAATTAAGAACATTT-TCAAACATT--CTCCCCGACGGGGAATTGAACCCC 166152 Query 60090 GGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 166153 GGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGA 166200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 171444 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 171503 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 171504 ATACTATCGAGGATT 171518 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 165815 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 165756 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 165755 TATACTATCGAGGA 165742 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 245477 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 245536 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 245537 ATACTATCGAGGAT 245550 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 327333 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 327392 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 327393 ATACTATCGAGGAT 327406 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 327595 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 327536 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 327535 ATACTATCGAGGAT 327522 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 212066 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 212007 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 212006 TACTATCGAGGA 211995 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 393126 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 393185 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 393186 TACTATCGAGGA 393197 >seq21692 Length=958343 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 60052 TTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111 || ||| || || ||||| || | |||||| |||||| ||||||||||||||||||||| Sbjct 42445 TTTTGATAACTTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGG 42504 Query 60112 CATACTCACCACTATACTACCGAGGA 60137 ||||| |||||||||||| |||||| Sbjct 42505 GATACTAACCACTATACTATCGAGGA 42530 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || || | || ||||| || | |||||| |||||| ||||||||||||||||||||| | Sbjct 42321 ATTAAGACTTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 42262 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| |||||||||||| |||||| Sbjct 42261 TACTAACCACTATACTATCGAGGA 42238 >seq20076 Length=424525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 18185 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 18126 Query 60124 TATACTACCGAGGAT 60138 ||||||| ||||||| Sbjct 18125 TATACTATCGAGGAT 18111 >seq4557 Length=397059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 221157 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 221098 Query 60124 TATACTACCGAGG-ATTGA 60141 ||||||| ||||| ||||| Sbjct 221097 TATACTATCGAGGAATTGA 221079 >seq22281 Length=154308 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 151222 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 151281 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 151282 ATACTATCGAGGAT 151295 >seq22228 Length=358660 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 193192 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 193251 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 193252 ATACTATCGAGGAT 193265 >seq20002 Length=45248 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 32450 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 32509 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 32510 ATACTATCGAGGAT 32523 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 32083 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 32024 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 32023 ATACTATCGAGGA 32011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571654496177320