Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq22136 120 6e-22 seq22232 96.9 7e-15 >seq22136 Length=515022 Score = 120 bits (132), Expect = 6e-22 Identities = 292/440 (66%), Gaps = 7/440 (2%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 |||||||| || || || || |||||||| || || ||||| |||||||||||| | Sbjct 290064 GCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGTTTCGCCTCCATTTTCTGGCTA 290005 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | ||| | |||| || || |||| |||||| || | || || ||||||| Sbjct 290004 AAGAAACGCGGTTTGATGCCGGGCCTGACCTTCTCCAACGAACTGATCTCCCGGGACGAG 289945 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGAT--ACCCCAT 102098 || | || | ||||| || | ||||| || || | | ||| | |||| Sbjct 289944 GGATTGCACTGTGACTTCGC---CGTGCTGATGTTCCAGCATCTGGTTCAGCGACCCAGG 289888 Query 102099 CAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCA 102158 | ||| | || | || || || ||| || || ||||| || || || |||| Sbjct 289887 CGCGAGC--GCATCATCGAGATCATCCGTGATGCGGTGGCCATTGAGCAGGAGTTCCTCA 289830 Query 102159 CAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTG 102218 | | | ||||||| || || | | || ||||||||| | | ||| |||||||||| Sbjct 289829 CCGATGCCCTGCCCGTAAACCTTATTGGCATGAACTGCGACCTCATGTCGCAGTACATTG 289770 Query 102219 AATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCA 102278 | || ||||| || | |||| ||| |||| | | |||| ||| || | | Sbjct 289769 AGTTCGTGGCGGACCGTTTGCTGGTGGAATTGGGCGTTGGAAAGATCTACAACACCAAGA 289710 Query 102279 ACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGA 102338 |||| ||| |||||||| | || ||||| || ||||||||||| || || |||| Sbjct 289709 ACCCGTTCAACTTCATGGAGATGATCTCCCTGGACGGCAAGACCAACTTCTTCGAGAAGA 289650 Query 102339 GAGTCGCCGAGTATCAACGT 102358 || | |||||| || ||| Sbjct 289649 AGGTGGGCGAGTACCAGCGT 289630 >seq22232 Length=226448 Score = 96.9 bits (106), Expect = 7e-15 Identities = 263/398 (66%), Gaps = 10/398 (3%) Strand=Plus/Minus Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACC 35455 || ||| |||| || || || || ||||| ||||| || ||||| || || |||| ||| Sbjct 54248 GGCGATCTGGGCCCGGTGTATGGTTTCCAGTGGCGGCACTTTGGCGCAGAGTATGGCACC 54189 Query 35456 TGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTG 35515 || ||| |||||||||||||| || || || ||| | || | | ||| | Sbjct 54188 TGCGAGGACGACTATACTGGAAAGGGCATCGACCAGTTGCGTCAGGTAATCGACACCATC 54129 Query 35516 AGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCA 35574 | |||| ||||| ||||| | || || ||| | || |||||||| | || | | Sbjct 54128 A-AGAAGAATCCCTCGGATAGGCGCATTATCATGTCAGCTTGGAATCCAGTAGACATACC 54070 Query 35575 CCTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAAT------G 35627 ||||| || || || |||||| || || || || || || || | | | Sbjct 54069 GAAGATGGCGCTGCCGCCGTGCCAC-TGCCTAGCGCAGTTCTACGTCTCCCAGACGCGCG 54011 Query 35628 GAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCA 35687 | ||| | || |||||| |||| ||| | |||| || | || ||||||||||||| | Sbjct 54010 GCGAACTCTCCTGCCAGCTGTACCAGAGGAGCGCCGACATGGGCCTGGGCGTGCCCTTTA 53951 Query 35688 ATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGG 35747 | || || || ||| | ||||| ||||| |||| || | | |||||| || || | Sbjct 53950 ACATCGCCTCCTACGCCCTTCTCACTCACATGATCGCTCATGTTACGGGTCTGAAGCCTG 53891 Query 35748 GAGAGTTTATCCTCACTCTTGGTGACGCACACATTTAT 35785 | || || | | ||| |||| || | ||| | ||| Sbjct 53890 GCGACTTCGTGCACACGTTTGGCGATACCCACGTCTAT 53853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989294676872145