Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq7516 84.2 8e-12 >seq7516 Length=1102 Score = 84.2 bits (92), Expect = 8e-12 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 48666 CAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATCGGCATGAGCCAGGAGACGCTG 48725 || || || ||||||||||| || ||||||| ||| | |||||| |||||| | ||| Sbjct 80 CATGTGGGAGCCCGCATCCGTCTGCGCCGCACCATGCTGGGCATGTCCCAGGAAAAGCTA 139 Query 48726 GCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAATACGAAAAGGGCGCCAACCGC 48785 | || | || || | || || ||||||||||||||||| ||| ||| |||| || Sbjct 140 GGTGAGGCGATCAGCCTGACGTTTCAGCAGGTCCAGAAATATGAACGTGGCACCAATCGG 199 Query 48786 GTCGGCGCC 48794 ||| ||||| Sbjct 200 GTCAGCGCC 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183559846273884