Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq1813 140 3e-28
seq8502 138 1e-27
seq8501 134 1e-26
>seq1813
Length=4749
Score = 140 bits (154), Expect = 3e-28
Identities = 362/549 (66%), Gaps = 2/549 (0%)
Strand=Plus/Plus
Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTA-TTAGTTCTCTCAATAGGTGTGGATT 37133
||||| ||||| | || ||||| | | || | ||| || ||||| | || | ||
Sbjct 1446 TTCTTCATGTCGTCATCCCACA-AGTCGAGCTCAGTTAAGTCCCTCAACAAATGATGGTT 1504
Query 37134 TACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTC 37193
|| ||||| || || ||||| | |||| ||| ||||| || || | ||||| || ||
Sbjct 1505 GACCACCTGGAATTCACCAGACAGAACTCGTCTGGTATAAATGTTCGTGGTATAGGGCTC 1564
Query 37194 AATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253
| || || || || | | ||||||| ||||| ||||||||||| || || | ||
Sbjct 1565 GAAAGATTCGTTGTTTCCCATAATTTGAGCAGTAGACGCAGTAGGCATAGGGGCAACAAG 1624
Query 37254 AAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAA 37313
||| || | | || || | || || || ||||||| | ||||||||| |
Sbjct 1625 CAGGGAGTTCCGGACACCGTGCTTTTTGATGGACTCCTTTAGTTTTTGCCAATCCCACAG 1684
Query 37314 ATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATC 37373
| ||||| | || |||||| || || || ||||| ||||| ||| | || |
Sbjct 1685 GTTCGTTGGCTGTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCACGGGGCTTCC 1744
Query 37374 GTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGC 37433
| ||| |||||||| || || | | | || ||||| || || | ||| || || |
Sbjct 1745 CTCATAGGTCTCATAGGGACCTTCGACCTGCGCCAGTTCACAGCTGGCTTCCAGGGCACC 1804
Query 37434 ATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGC 37493
|| || || ||||| || || || ||| || | || ||||| || || |||
Sbjct 1805 GTAGTAAATCGTTTCAAATATCTGCTGATTCAAAAGACCGGCCTCTTCACTTTCATATGG 1864
Query 37494 ATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATG 37553
| | || | || || | ||||| ||||||||||||||||| || | ||| | |||
Sbjct 1865 GAATCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACACCGATGCCCACGGGACGATG 1924
Query 37554 TTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATT 37613
| || ||| ||| | | ||| | |||||| | |||||||| ||||| || ||
Sbjct 1925 TCTCAAATTGGATTTCTTTGCCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGTT 1984
Query 37614 TAGATTTTT 37622
||||||||
Sbjct 1985 GAGATTTTT 1993
>seq8502
Length=4749
Score = 138 bits (152), Expect = 1e-27
Identities = 363/550 (66%), Gaps = 3/550 (1%)
Strand=Plus/Plus
Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTA-TTAGTTCTCTCAATAGGTGTGGATT 37133
||||| ||||| | || ||||| | | || | ||| || ||||| | || | ||
Sbjct 1446 TTCTTCATGTCGTCATCCCACA-AGTCGAGCTCAGTTAAGTCCCTCAACAAATGATGGTT 1504
Query 37134 TACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTC 37193
|| ||||| || || ||||| | |||| ||| ||||| || || | ||||| || ||
Sbjct 1505 GACCACCTGGAATTCACCAGACAGAACTCGTCTGGTATAAATGTTCGTGGTATAGGGCTC 1564
Query 37194 AATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253
| || || || || | | ||||||| ||||| ||||||||||| || || | ||
Sbjct 1565 GAAAGATTCGTTGTTTCCCATAATTTGAGCAGTAGACGCAGTAGGCATAGGGGCAACAAG 1624
Query 37254 AAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAA 37313
||| || | | || || | || || || ||||||| | ||||||||| |
Sbjct 1625 CAGGGAGTTCCGGACACCGTGCTTTTTGATGGACTCCTTTAGTTTTTGCCAATCCCACAG 1684
Query 37314 ATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATC 37373
| ||||| | || |||||| || || || ||||| ||||| ||| | || |
Sbjct 1685 GTTCGTTGGCTGTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCACGGGGCTTCC 1744
Query 37374 GTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGC 37433
| ||| |||||||| || || | | | || ||||| || || | ||| || || |
Sbjct 1745 CTCATAGGTCTCATAGGGACCTTCGACCTGCGCCAGTTCACAGCTGGCTTCCAGGGCACC 1804
Query 37434 ATAATATATTGTTTCGAAAATTTGTATATT-TAATATTTTTGCTTCTTCGCTATCGAATG 37492
|| || || ||||| || || || ||| || | |||||||| || || |||
Sbjct 1805 GTAGTAAATCGTTTCAAATATCTGCTGATTCAAAAAGACCGGCTTCTTCACTTTCATATG 1864
Query 37493 CATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTAT 37552
| | || | || || | ||||| ||||||||||||||||| || | ||| | ||
Sbjct 1865 GGAATCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACACCGATGCCCACGGGACGAT 1924
Query 37553 GTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTAT 37612
|| || ||| ||| | | ||| | |||||| | |||||||| ||||| || |
Sbjct 1925 GTCTCAAATTGGATTTCTTTGCCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGT 1984
Query 37613 TTAGATTTTT 37622
| ||||||||
Sbjct 1985 TGAGATTTTT 1994
>seq8501
Length=20033
Score = 134 bits (148), Expect = 1e-26
Identities = 365/552 (66%), Gaps = 5/552 (1%)
Strand=Plus/Minus
Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTA-TTAGTTCTCTCAATAGGTGTGGATT 37133
||||| ||||| | || ||||| | | || | ||| || ||||| | || | ||
Sbjct 2510 TTCTTCATGTCGTCATCCCACA-AGTCGAGCTCAGTTAAGTCCCTCAACAAATGATGGTT 2452
Query 37134 TACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTC 37193
|| ||||| || || ||||| | |||| ||| ||||| || || | ||||| || ||
Sbjct 2451 GACCACCTGGAATTCACCAGACAGAACTCGTCTGGTATAAATGTTCGTGGTATAGGGCTC 2392
Query 37194 AATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253
| || || || || | | ||||||| ||||| ||||||||||| || || | ||
Sbjct 2391 GAAAGATTCGTTGTTTCCCATAATTTGAGCAGTAGACGCAGTAGGCATAGGGGCAACAAG 2332
Query 37254 AAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAA 37313
||| || | | || || | || || || ||||||| | ||||||||| |
Sbjct 2331 CAGGGAGTTCCGGACACCGTGCTTTTTGATGGACTCCTTTAGTTTTTGCCAATCCCACAG 2272
Query 37314 ATCTGTTGGGTTCTTTAACCACATATCATATTG-TAGAATACCTTTACTCGC-TGGAGAA 37371
| ||||| | || |||||| || || || |||||| ||||| ||| | || |
Sbjct 2271 GTTCGTTGGCTGTTTGTCCCACATGTCGTACTGCTAGAATTCCTTTGCTCACGGGGCTTA 2212
Query 37372 TCGTTATATGT-CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGC 37430
| | ||| || |||||| || || | | | || ||||| || || | ||| || ||
Sbjct 2211 CCCTCATAGGTACTCATAGGGACCTTCGACCTGCGCCAGTTCACAGCTGGCTTCCAGGGC 2152
Query 37431 GGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAA 37490
| || || || ||||| || || || ||| || | |||||||| || || |
Sbjct 2151 ACCGTAGTAAATCGTTTCAAATATCTGCTGATTCAAAAGACCGGCTTCTTCACTTTCATA 2092
Query 37491 TGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCT 37550
|| | | || | || || | ||||| ||||||||||||||||| || | ||| |
Sbjct 2091 TGGGAATCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACACCGATGCCCACGGGACG 2032
Query 37551 ATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTT 37610
|||| || ||| ||| | | ||| | |||||| | |||||||| ||||| ||
Sbjct 2031 ATGTCTCAAATTGGATTTCTTTGCCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTT 1972
Query 37611 ATTTAGATTTTT 37622
|| ||||||||
Sbjct 1971 GTTGAGATTTTT 1960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468391159157360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |