Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1813 140 3e-28 seq8502 138 1e-27 seq8501 134 1e-26 >seq1813 Length=4749 Score = 140 bits (154), Expect = 3e-28 Identities = 362/549 (66%), Gaps = 2/549 (0%) Strand=Plus/Plus Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTA-TTAGTTCTCTCAATAGGTGTGGATT 37133 ||||| ||||| | || ||||| | | || | ||| || ||||| | || | || Sbjct 1446 TTCTTCATGTCGTCATCCCACA-AGTCGAGCTCAGTTAAGTCCCTCAACAAATGATGGTT 1504 Query 37134 TACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTC 37193 || ||||| || || ||||| | |||| ||| ||||| || || | ||||| || || Sbjct 1505 GACCACCTGGAATTCACCAGACAGAACTCGTCTGGTATAAATGTTCGTGGTATAGGGCTC 1564 Query 37194 AATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253 | || || || || | | ||||||| ||||| ||||||||||| || || | || Sbjct 1565 GAAAGATTCGTTGTTTCCCATAATTTGAGCAGTAGACGCAGTAGGCATAGGGGCAACAAG 1624 Query 37254 AAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAA 37313 ||| || | | || || | || || || ||||||| | ||||||||| | Sbjct 1625 CAGGGAGTTCCGGACACCGTGCTTTTTGATGGACTCCTTTAGTTTTTGCCAATCCCACAG 1684 Query 37314 ATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATC 37373 | ||||| | || |||||| || || || ||||| ||||| ||| | || | Sbjct 1685 GTTCGTTGGCTGTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCACGGGGCTTCC 1744 Query 37374 GTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGC 37433 | ||| |||||||| || || | | | || ||||| || || | ||| || || | Sbjct 1745 CTCATAGGTCTCATAGGGACCTTCGACCTGCGCCAGTTCACAGCTGGCTTCCAGGGCACC 1804 Query 37434 ATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGC 37493 || || || ||||| || || || ||| || | || ||||| || || ||| Sbjct 1805 GTAGTAAATCGTTTCAAATATCTGCTGATTCAAAAGACCGGCCTCTTCACTTTCATATGG 1864 Query 37494 ATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATG 37553 | | || | || || | ||||| ||||||||||||||||| || | ||| | ||| Sbjct 1865 GAATCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACACCGATGCCCACGGGACGATG 1924 Query 37554 TTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATT 37613 | || ||| ||| | | ||| | |||||| | |||||||| ||||| || || Sbjct 1925 TCTCAAATTGGATTTCTTTGCCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGTT 1984 Query 37614 TAGATTTTT 37622 |||||||| Sbjct 1985 GAGATTTTT 1993 >seq8502 Length=4749 Score = 138 bits (152), Expect = 1e-27 Identities = 363/550 (66%), Gaps = 3/550 (1%) Strand=Plus/Plus Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTA-TTAGTTCTCTCAATAGGTGTGGATT 37133 ||||| ||||| | || ||||| | | || | ||| || ||||| | || | || Sbjct 1446 TTCTTCATGTCGTCATCCCACA-AGTCGAGCTCAGTTAAGTCCCTCAACAAATGATGGTT 1504 Query 37134 TACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTC 37193 || ||||| || || ||||| | |||| ||| ||||| || || | ||||| || || Sbjct 1505 GACCACCTGGAATTCACCAGACAGAACTCGTCTGGTATAAATGTTCGTGGTATAGGGCTC 1564 Query 37194 AATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253 | || || || || | | ||||||| ||||| ||||||||||| || || | || Sbjct 1565 GAAAGATTCGTTGTTTCCCATAATTTGAGCAGTAGACGCAGTAGGCATAGGGGCAACAAG 1624 Query 37254 AAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAA 37313 ||| || | | || || | || || || ||||||| | ||||||||| | Sbjct 1625 CAGGGAGTTCCGGACACCGTGCTTTTTGATGGACTCCTTTAGTTTTTGCCAATCCCACAG 1684 Query 37314 ATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATC 37373 | ||||| | || |||||| || || || ||||| ||||| ||| | || | Sbjct 1685 GTTCGTTGGCTGTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCACGGGGCTTCC 1744 Query 37374 GTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGC 37433 | ||| |||||||| || || | | | || ||||| || || | ||| || || | Sbjct 1745 CTCATAGGTCTCATAGGGACCTTCGACCTGCGCCAGTTCACAGCTGGCTTCCAGGGCACC 1804 Query 37434 ATAATATATTGTTTCGAAAATTTGTATATT-TAATATTTTTGCTTCTTCGCTATCGAATG 37492 || || || ||||| || || || ||| || | |||||||| || || ||| Sbjct 1805 GTAGTAAATCGTTTCAAATATCTGCTGATTCAAAAAGACCGGCTTCTTCACTTTCATATG 1864 Query 37493 CATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTAT 37552 | | || | || || | ||||| ||||||||||||||||| || | ||| | || Sbjct 1865 GGAATCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACACCGATGCCCACGGGACGAT 1924 Query 37553 GTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTAT 37612 || || ||| ||| | | ||| | |||||| | |||||||| ||||| || | Sbjct 1925 GTCTCAAATTGGATTTCTTTGCCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGT 1984 Query 37613 TTAGATTTTT 37622 | |||||||| Sbjct 1985 TGAGATTTTT 1994 >seq8501 Length=20033 Score = 134 bits (148), Expect = 1e-26 Identities = 365/552 (66%), Gaps = 5/552 (1%) Strand=Plus/Minus Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTA-TTAGTTCTCTCAATAGGTGTGGATT 37133 ||||| ||||| | || ||||| | | || | ||| || ||||| | || | || Sbjct 2510 TTCTTCATGTCGTCATCCCACA-AGTCGAGCTCAGTTAAGTCCCTCAACAAATGATGGTT 2452 Query 37134 TACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTC 37193 || ||||| || || ||||| | |||| ||| ||||| || || | ||||| || || Sbjct 2451 GACCACCTGGAATTCACCAGACAGAACTCGTCTGGTATAAATGTTCGTGGTATAGGGCTC 2392 Query 37194 AATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253 | || || || || | | ||||||| ||||| ||||||||||| || || | || Sbjct 2391 GAAAGATTCGTTGTTTCCCATAATTTGAGCAGTAGACGCAGTAGGCATAGGGGCAACAAG 2332 Query 37254 AAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAA 37313 ||| || | | || || | || || || ||||||| | ||||||||| | Sbjct 2331 CAGGGAGTTCCGGACACCGTGCTTTTTGATGGACTCCTTTAGTTTTTGCCAATCCCACAG 2272 Query 37314 ATCTGTTGGGTTCTTTAACCACATATCATATTG-TAGAATACCTTTACTCGC-TGGAGAA 37371 | ||||| | || |||||| || || || |||||| ||||| ||| | || | Sbjct 2271 GTTCGTTGGCTGTTTGTCCCACATGTCGTACTGCTAGAATTCCTTTGCTCACGGGGCTTA 2212 Query 37372 TCGTTATATGT-CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGC 37430 | | ||| || |||||| || || | | | || ||||| || || | ||| || || Sbjct 2211 CCCTCATAGGTACTCATAGGGACCTTCGACCTGCGCCAGTTCACAGCTGGCTTCCAGGGC 2152 Query 37431 GGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAA 37490 | || || || ||||| || || || ||| || | |||||||| || || | Sbjct 2151 ACCGTAGTAAATCGTTTCAAATATCTGCTGATTCAAAAGACCGGCTTCTTCACTTTCATA 2092 Query 37491 TGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCT 37550 || | | || | || || | ||||| ||||||||||||||||| || | ||| | Sbjct 2091 TGGGAATCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACACCGATGCCCACGGGACG 2032 Query 37551 ATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTT 37610 |||| || ||| ||| | | ||| | |||||| | |||||||| ||||| || Sbjct 2031 ATGTCTCAAATTGGATTTCTTTGCCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTT 1972 Query 37611 ATTTAGATTTTT 37622 || |||||||| Sbjct 1971 GTTGAGATTTTT 1960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468391159157360