Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq22232 190 2e-43
>seq22232
Length=226448
Score = 190 bits (210), Expect = 2e-43
Identities = 292/414 (71%), Gaps = 8/414 (2%)
Strand=Plus/Plus
Query 20928 GGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGG 20987
|| || ||||| || || ||||||| || || || |||||||| ||||| || ||
Sbjct 53836 GGGTCTACGTGATTCAGATAGACGTGGGTATCGCCAAACGTGTGCACGAAGTCGCCAGGC 53895
Query 20988 GTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAAC 21047
|||| ||||| || |||||||||| | || || ||||||||| ||||||||||||
Sbjct 53896 TTCAGACCCGTAACATGAGCGATCATGTGAGTGAGAAGGGCGTAGGAGGCGATGTTAAAG 53955
Query 21048 GGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGA 21107
|| || || ||||||||||||||| ||||||||||||||||||||| || || || ||
Sbjct 53956 GGCACGCCCAGGCCCATGTCGGCGCTCCTCTGGTACAGCTGGCAGGAGAGTTCGCCGCGC 54015
Query 21108 GCC------ACGTAAAACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAG 21160
| | ||||| ||||| | | | | ||| || || || || |||||| || |
Sbjct 54016 GTCTGGGAGACGTAGAACTG-CGCTAGGCAGTGGCACGGCGGCAGCGCCATCTTCGGTAT 54074
Query 21161 GTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAG 21220
||| | || ||||| || |||| | ||||||| ||| ||| | | || ||
Sbjct 54075 GTCTACTGGATTCCAAGCTGACATGATAATGCGCCTATCCGAGGGATTCTTCTTGATGGT 54134
Query 21221 ATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCT 21280
|| | || | ||||| |||||| | |||| || |||| | | ||| |
Sbjct 54135 GTCGATTACCTGACGCAACTGGTCGATGCCCTTTCCAGTATAGTCGTCCTCGCAGGTGCC 54194
Query 21281 GTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334
||||| || ||||| || | ||||||||| || |||||||| |||||||||||
Sbjct 54195 ATACTCTGCGCCAAAGTGCCGCCACTGGAAACCATACACCGGGCCCAGATCGCC 54248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427657032687120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |