Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq22232 190 2e-43 >seq22232 Length=226448 Score = 190 bits (210), Expect = 2e-43 Identities = 292/414 (71%), Gaps = 8/414 (2%) Strand=Plus/Plus Query 20928 GGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGG 20987 || || ||||| || || ||||||| || || || |||||||| ||||| || || Sbjct 53836 GGGTCTACGTGATTCAGATAGACGTGGGTATCGCCAAACGTGTGCACGAAGTCGCCAGGC 53895 Query 20988 GTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAAC 21047 |||| ||||| || |||||||||| | || || ||||||||| |||||||||||| Sbjct 53896 TTCAGACCCGTAACATGAGCGATCATGTGAGTGAGAAGGGCGTAGGAGGCGATGTTAAAG 53955 Query 21048 GGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGA 21107 || || || ||||||||||||||| ||||||||||||||||||||| || || || || Sbjct 53956 GGCACGCCCAGGCCCATGTCGGCGCTCCTCTGGTACAGCTGGCAGGAGAGTTCGCCGCGC 54015 Query 21108 GCC------ACGTAAAACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAG 21160 | | ||||| ||||| | | | | ||| || || || || |||||| || | Sbjct 54016 GTCTGGGAGACGTAGAACTG-CGCTAGGCAGTGGCACGGCGGCAGCGCCATCTTCGGTAT 54074 Query 21161 GTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAG 21220 ||| | || ||||| || |||| | ||||||| ||| ||| | | || || Sbjct 54075 GTCTACTGGATTCCAAGCTGACATGATAATGCGCCTATCCGAGGGATTCTTCTTGATGGT 54134 Query 21221 ATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCT 21280 || | || | ||||| |||||| | |||| || |||| | | ||| | Sbjct 54135 GTCGATTACCTGACGCAACTGGTCGATGCCCTTTCCAGTATAGTCGTCCTCGCAGGTGCC 54194 Query 21281 GTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 ||||| || ||||| || | ||||||||| || |||||||| ||||||||||| Sbjct 54195 ATACTCTGCGCCAAAGTGCCGCCACTGGAAACCATACACCGGGCCCAGATCGCC 54248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427657032687120