Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq5502 109 5e-19
seq20501 107 2e-18
seq22266 96.9 3e-15
seq22190 93.3 4e-14
>seq5502
Length=68615
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | ||| ||||||| || || || || || ||||| || |||
Sbjct 6047 GCCACCGCGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 6106
Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
| || | || | ||||| ||||| || || ||| |||||||||| |||||||| || |
Sbjct 6107 AAGGGTTCGTCCA-TCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGG 6165
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
| || || || ||||| ||| || || | | || | ||||||| |||||||
Sbjct 6166 GAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCCA 6225
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||| ||| | || ||||| |||| || || ||||| ||||||||
Sbjct 6226 CCTCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6274
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | || ||||| || || |||||||||||| |
Sbjct 5820 CCTCCGCGGAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGAC 5879
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| || | ||||| | ||| || || || |||||| ||| |||||||| || ||
Sbjct 5880 AGAGTGCGTCCA-TCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 5938
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| || || ||||| ||| || || | | || | || || | ||| || ||
Sbjct 5939 AATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGAC 5998
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | || || |||||||| || |||||||| ||||||||
Sbjct 5999 TTCCAAGGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6046
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | || | ||| ||||||| || || || || || ||||| || ||
Sbjct 6275 GCCACCGCGGAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGA 6334
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| ||||| | || || ||||| | || |||||||||||||| || ||
Sbjct 6335 AAGGGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGG 6394
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
||||| || ||||| ||| || || | | ||| | ||||||| |||||| ||
Sbjct 6395 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAAC 6454
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | |||||||| |||| || |||||||| || |||||
Sbjct 6455 CTCCAGCGTAATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 6502
Score = 89.7 bits (98), Expect = 5e-13
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | || ||||||| || || || || || ||||| || |||
Sbjct 7187 GCCACCGCGAAGACGGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 7246
Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
| || | || | ||||| ||||| || || ||| |||||||||| ||||| || || |
Sbjct 7247 AAGGGTTCGTCCA-TCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGG 7305
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
| ||||| || || || ||| | || | |||| | || | || |||| ||||||
Sbjct 7306 GAATGCCCTCCTTATCC-TGAATCTTGGCCTTTACATTCTCGATCGTATCGGAAGGCTCC 7364
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| | || | |||||||| ||||| || || || || || |||||
Sbjct 7365 ACCTCCAAAGTAATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 7414
>seq20501
Length=31302
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||||| || ||||| | || ||||| || ||||||||||| ||
Sbjct 11117 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 11176
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | ||||| ||||| || ||||| |||||||||| |||||||| |||||
Sbjct 11177 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 11236
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||||||||| ||| | || | ||| | | ||| | ||||| | || || ||
Sbjct 11237 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGAC 11295
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| || | |||||||| || | || || ||||| || |||||
Sbjct 11296 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11343
>seq22266
Length=384576
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| || ||||| || || ||||| || || || |||| || || |||||
Sbjct 109181 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCCAGCTGC 109240
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| || || |||||||||| |||||||| || || ||||| || ||||| ||| ||
Sbjct 109241 TTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTG 109300
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|| | | || | ||||| | ||||||||||| | ||| | |||||||||||
Sbjct 109301 GCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTG 109360
Query 139742 AACGTTTTTACGAATATTTGCAT 139764
| ||||| ||||| ||||||||
Sbjct 109361 AGGGTTTTCACGAAAATTTGCAT 109383
>seq22190
Length=927835
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614
|| ||||| | |||||||| || || ||||| || ||| || |||| || | |||||
Sbjct 837278 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCA-TCTTC 837220
Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674
|||||||| || || |||||| || ||||| || || || || || || |||||
Sbjct 837219 CAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTG 837160
Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
||| || || | | || | || |||| ||||| ||||| | || | |||||
Sbjct 837159 GATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTT 837100
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||||||| || || || || ||||||||
Sbjct 837099 GCCGGTCAAAGTCTTCACAAAAATTTGCAT 837070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495922503944800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |