Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5502 95.1 9e-15 seq22190 89.7 4e-13 >seq5502 Length=68615 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||| ||| || ||| | ||||| Sbjct 7206 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCA 7265 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | |||| ||| || ||||| ||||| || || || || | Sbjct 7266 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGA 7325 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||||||| | || || |||||| | || || || || |||||||| || Sbjct 7326 ATCTTGGCCTTTACATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCTTG 7385 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || |||| || || ||||| || ||||| || || Sbjct 7386 CCAGTCAATGTCTTCACAAAGATCTGCATTTTGGA 7420 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | | || | ||| || ||||||||||| || || || |||||||| || Sbjct 6274 TGCCACCGCGGAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCG 6333 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | ||||| ||||| || |||||| | || | |||||| || || || Sbjct 6334 AAAGGGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTG 6393 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || || ||||| || ||| ||| ||| |||| ||||| ||| || | Sbjct 6394 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAA 6453 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | |||||||| || || ||||| || ||||| || || ||||| Sbjct 6454 CCTCCAGCGTAATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 6502 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||||||||| || || || |||||||| ||| || ||| | ||||| Sbjct 6065 AACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTC 6124 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || ||||| || | |||| ||| || || || ||||| || || ||||| Sbjct 6125 AAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 6184 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| | || || || ||| || || || | |||||||||||| Sbjct 6185 GATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCCACCTCAAGGGTAATGGTTTT 6244 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || || |||||||| Sbjct 6245 GCCAGTCAGGGTCTTCACGAAGATTTGCAT 6274 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||||||||| || || || |||||||| || || | | | ||||| Sbjct 6977 AACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTC 7036 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || || |||||| | || | ||| || || || |||||||| || || || Sbjct 7037 CAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTG 7096 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| ||| |||| ||||| || ||| || || ||||| ||||| || Sbjct 7097 AATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCGACTTCCAAGGTGATGGTCTT 7156 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || ||||| || |||||||| Sbjct 7157 TCCGGTCAAGGTCTTTACGAAGATTTGCAT 7186 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | | || | ||| || ||||||||||| || || || |||||||| ||| Sbjct 6502 TGCCACCGCGGAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 6561 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | ||||| || || || |||||| | || | ||| || || || | Sbjct 6562 AAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGG 6621 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||||| || || || ||| || ||| ||| |||| ||||| || || | Sbjct 6622 GAATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCA 6681 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || |||||||| || |||| || ||||| || |||||||| Sbjct 6682 CTTCGAGAGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730 >seq22190 Length=927835 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || || || |||||||| ||| | | | | ||||| Sbjct 837278 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCC 837219 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||| || ||| | ||||| || || ||||| |||||||| || ||||| Sbjct 837218 AGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 837159 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || ||||||||| | || || || || || ||||| || Sbjct 837158 ATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTG 837099 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || |||| ||| || |||||||||||||| || Sbjct 837098 CCGGTCAAAGTCTTCACAAAAATTTGCATGTT 837067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362078475587679