Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq22228 104 2e-17 >seq22228 Length=358660 Score = 104 bits (114), Expect = 2e-17 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 21141 GTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGCGT 21200 ||||||||||||||| | ||| || || || || |||| |||||||| | | | ||| Sbjct 288151 GTTGCCCAGATCGCCCAGGTGGCGGTCCTCGTCGGCGGGGGCGCCGTGCTCCTTGC-CGT 288093 Query 21201 AGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGAA 21259 | || || |||||| |||| ||| ||||||||||| || |||| ||||||||||| | Sbjct 288092 AAGGATTGAAGTGCGGCCCGGATGACATGCAGCCGTTGGTGTTGTCACCGAACTCGTGCA 288033 Query 21260 CGTGAAAGCCGTGCAGTCC 21278 |||| || |||||||| || Sbjct 288032 CGTGGAATCCGTGCAGACC 288014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414457504583686