Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq22190 104 1e-17 seq5502 98.7 6e-16 >seq22190 Length=927835 Score = 104 bits (114), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||||||||| || ||||| || || || ||||| || ||||| || || | Sbjct 837739 CGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCG 837680 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| ||| ||| || ||||| |||||||| | ||| |||||||| || Sbjct 837679 TCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTG 837620 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| || ||| ||| | || || || || Sbjct 837619 TCCTGGATTTTAGCC---TTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTG 837563 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || ||||| || || || || |||||| Sbjct 837562 ATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCATG 837524 >seq5502 Length=68615 Score = 98.7 bits (108), Expect = 6e-16 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | |||||||| ||||| || |||||||||||||| | || | Sbjct 6744 CGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGACAACGTACGTCCG 6803 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| |||||| || ||| ||||| || ||||| || | ||| || || || || Sbjct 6804 TCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGAATACCCTCCTTG 6863 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||||||||| || | || || || || Sbjct 6864 TCCTGGATCTTGGCC---TTCACATTCTCGATCGTGTCGGATGGCTCGACCTCAAGGGTA 6920 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| || || || || || ||||| ||||||||| Sbjct 6921 ATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATG 6959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318688945857462