Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq22190 104 1e-17
seq5502 98.7 6e-16
>seq22190
Length=927835
Score = 104 bits (114), Expect = 1e-17
Identities = 155/219 (71%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| ||||||||||| || ||||| || || || ||||| || ||||| || || |
Sbjct 837739 CGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCG 837680
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| ||||| ||||| ||| ||| || ||||| |||||||| | ||| |||||||| ||
Sbjct 837679 TCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTG 837620
Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | ||| || || | | ||| || ||| ||| | || || || ||
Sbjct 837619 TCCTGGATTTTAGCC---TTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTG 837563
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| || || || || ||||| || || || || ||||||
Sbjct 837562 ATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCATG 837524
>seq5502
Length=68615
Score = 98.7 bits (108), Expect = 6e-16
Identities = 154/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||| ||||| || | |||||||| ||||| || |||||||||||||| | || |
Sbjct 6744 CGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGACAACGTACGTCCG 6803
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| |||| |||||| || ||| ||||| || ||||| || | ||| || || || ||
Sbjct 6804 TCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGAATACCCTCCTTG 6863
Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | ||| || || | | ||||||||| || | || || || ||
Sbjct 6864 TCCTGGATCTTGGCC---TTCACATTCTCGATCGTGTCGGATGGCTCGACCTCAAGGGTA 6920
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| ||||| || || || || || ||||| |||||||||
Sbjct 6921 ATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATG 6959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318688945857462
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |