Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq20501 154 3e-32
seq5502 147 5e-30
>seq20501
Length=31302
Score = 154 bits (170), Expect = 3e-32
Identities = 159/208 (76%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|| || || || || |||||||| ||||||||||| || || | || ||||| || ||
Sbjct 11141 TGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATCTTCCAGCTGC 11200
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||| || || || | ||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 11201 TTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 11260
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
||||| |||||||| | || || ||||| ||||| || || || ||||| || ||
Sbjct 11261 GCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTG 11320
Query 104537 AGTGTTTTTACAAATATCTGCATTTTGT 104564
|| || || || || |||||||| ||||
Sbjct 11321 AGGGTCTTAACGAAGATCTGCATCTTGT 11348
>seq5502
Length=68615
Score = 147 bits (162), Expect = 5e-30
Identities = 153/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| || || ||||| || || |||| || ||||| || || || ||
Sbjct 7218 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCAAGCTGCTTGCCG 7277
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| || || || || || || || |||||||||||||| || |||
Sbjct 7278 GCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTT 7337
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| ||| || ||||| | ||||| ||||| ||||| | |||
Sbjct 7338 ACATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAGTCAATGTC 7397
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| ||||| ||||||||||||
Sbjct 7398 TTCACAAAGATCTGCATTTTG 7418
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| || || ||||| || || || | || ||||| | || ||||||
Sbjct 6990 GTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCA 7049
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || | ||| ||||| || || ||||| || |||||||||||||| || ||
Sbjct 7050 GCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTAGCCTTC 7109
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||| | ||| || ||||| || || | || || ||||| || || | ||
Sbjct 7110 ACATTTTCAATGGTGTCAGATGGTTCGACTTCCAAGGTGATGGTCTTTCCGGTCAAGGTC 7169
Query 104543 TTTACAAATATCTGCAT 104559
||||| || || |||||
Sbjct 7170 TTTACGAAGATTTGCAT 7186
Score = 116 bits (128), Expect = 9e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| || || ||||| || || || | || ||||| | || ||||||
Sbjct 6534 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCA 6593
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || | ||| ||||| || || ||||| || |||||||||||||| || ||
Sbjct 6594 GCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTAGCCTTC 6653
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||| | ||| || || || || || || || || || || || || | ||
Sbjct 6654 ACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGAGTGATGGTTTTTCCGGTCAAGGTC 6713
Query 104543 TTTACAAATATCTGCAT 104559
||||| || || |||||
Sbjct 6714 TTTACGAAGATTTGCAT 6730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151061767448852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |