Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq20501 154 3e-32 seq5502 147 5e-30 >seq20501 Length=31302 Score = 154 bits (170), Expect = 3e-32 Identities = 159/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || |||||||| ||||||||||| || || | || ||||| || || Sbjct 11141 TGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATCTTCCAGCTGC 11200 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 11201 TTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 11260 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | || || ||||| ||||| || || || ||||| || || Sbjct 11261 GCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTG 11320 Query 104537 AGTGTTTTTACAAATATCTGCATTTTGT 104564 || || || || || |||||||| |||| Sbjct 11321 AGGGTCTTAACGAAGATCTGCATCTTGT 11348 >seq5502 Length=68615 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| || || |||| || ||||| || || || || Sbjct 7218 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCAAGCTGCTTGCCG 7277 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || || |||||||||||||| || ||| Sbjct 7278 GCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTT 7337 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| ||| || ||||| | ||||| ||||| ||||| | ||| Sbjct 7338 ACATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAGTCAATGTC 7397 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||| Sbjct 7398 TTCACAAAGATCTGCATTTTG 7418 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| || || || | || ||||| | || |||||| Sbjct 6990 GTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCA 7049 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 7050 GCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTAGCCTTC 7109 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || ||||| || || | || || ||||| || || | || Sbjct 7110 ACATTTTCAATGGTGTCAGATGGTTCGACTTCCAAGGTGATGGTCTTTCCGGTCAAGGTC 7169 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || || ||||| Sbjct 7170 TTTACGAAGATTTGCAT 7186 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| || || || | || ||||| | || |||||| Sbjct 6534 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCA 6593 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 6594 GCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTAGCCTTC 6653 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || || || || || || || || || || || | || Sbjct 6654 ACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGAGTGATGGTTTTTCCGGTCAAGGTC 6713 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || || ||||| Sbjct 6714 TTTACGAAGATTTGCAT 6730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151061767448852