Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq22465 96.9 3e-15
>seq22465
Length=63631
Score = 96.9 bits (106), Expect = 3e-15
Identities = 175/254 (69%), Gaps = 4/254 (2%)
Strand=Plus/Minus
Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299
|| || ||||||||||| |||||||| |||||||| |||| || ||| |
Sbjct 17490 CCCGTGGAACCGAATCCTCCCTCGCCGCGTTCGGTGTCCTCCAGTTTGTCGACCAGCTCC 17431
Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359
| | | || | | ||||| ||||| || | ||||| || | ||| || ||| |||
Sbjct 17430 AGTTCCGGATAGAAGATGCGCTCGCAAATGAATTGAGCGATGCGGTCGCCGCGCTTCACC 17371
Query 5360 TCAAAGTCGCTGTTTCCGA--AGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417
||||| || | ||||| || ||||| || || |||| ||||| ||||| || |
Sbjct 17370 TCAAACTCCACG--TCCGAGTGATTGAACAGAACGACGCCGAGGTTGCCGCGGTAATCCT 17313
Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477
| || | || || |||||||| ||||| |||| || || || || ||||| ||||| |
Sbjct 17312 CATCCACCACACCGGCGCCCACATCGATGAAGTTCTTCACGGCCAGTCCGGACCGTGGGG 17253
Query 5478 CTATGCGTCCGTAG 5491
| | || ||||||
Sbjct 17252 CCACACGGCCGTAG 17239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447622684795280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |