Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq22465 96.9 3e-15 >seq22465 Length=63631 Score = 96.9 bits (106), Expect = 3e-15 Identities = 175/254 (69%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299 || || ||||||||||| |||||||| |||||||| |||| || ||| | Sbjct 17490 CCCGTGGAACCGAATCCTCCCTCGCCGCGTTCGGTGTCCTCCAGTTTGTCGACCAGCTCC 17431 Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359 | | | || | | ||||| ||||| || | ||||| || | ||| || ||| ||| Sbjct 17430 AGTTCCGGATAGAAGATGCGCTCGCAAATGAATTGAGCGATGCGGTCGCCGCGCTTCACC 17371 Query 5360 TCAAAGTCGCTGTTTCCGA--AGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 ||||| || | ||||| || ||||| || || |||| ||||| ||||| || | Sbjct 17370 TCAAACTCCACG--TCCGAGTGATTGAACAGAACGACGCCGAGGTTGCCGCGGTAATCCT 17313 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 | || | || || |||||||| ||||| |||| || || || || ||||| ||||| | Sbjct 17312 CATCCACCACACCGGCGCCCACATCGATGAAGTTCTTCACGGCCAGTCCGGACCGTGGGG 17253 Query 5478 CTATGCGTCCGTAG 5491 | | || |||||| Sbjct 17252 CCACACGGCCGTAG 17239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447622684795280