Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq22465 159 3e-34 >seq22465 Length=63631 Score = 159 bits (176), Expect = 3e-34 Identities = 212/290 (73%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||||||||| |||||||| || |||| | ||| || || ||||| | ||| Sbjct 17493 ACGCCCGTGGAACCGAATCCTCCCTCGCCGCGTTCGGTGTCCTCCAGTTTGTCGACCAGC 17434 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 |||| || || | | || ||||||||| || | || || || |||||||| ||| Sbjct 17433 TCCAGTTCCGGATA-GAAGATGCGCTCGCAAATGAATTGAGCGATGCGGTCGCCGCGCTT 17375 Query 5620 TACCTCGAAATCGTTGTGGCCGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 ||||| || || || |||| |||||||| || ||||| | |||||||||||| Sbjct 17374 CACCTCAAACTCCACGT--CCGAGTGATTGAACAGAACGACGCCGAGGTTGCCGCGGTAA 17317 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || | || | ||| || |||||||| |||||||||| ||| || ||||| ||||| || Sbjct 17316 TCCTCATCCACCACACCGGCGCCCACATCGATGAAGTTCTTCACGGCCAGTCCGGACCGT 17257 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || ||||| ||||||||| | || || |||| ||| | ||||||||| || Sbjct 17256 GGGGCCACACGGCCGTAGGAGCCCTCCGGAACCTGCACCTGCAGGTCGGT 17207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934799049128