Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq22232 114 9e-21 seq22465 87.8 1e-12 >seq22232 Length=226448 Score = 114 bits (126), Expect = 9e-21 Identities = 163/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 25374 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCT 25433 || ||| |||| |||| ||||||| ||| | || || || ||| | || ||| Sbjct 53782 TTGATCACCAGTTTGGGGAAGGGTCGCGGCGTACGCTTCAGTTGCTCCTTTAATGGGTCT 53841 Query 25434 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGC 25493 ||||||| ||| |||||||| | || || | ||||| || || || || || | || Sbjct 53842 ACGTGATTCAGATAGACGTGGGTATCGCCAAACGTGTGCACGAAGTCGCCAGGCTTCAGA 53901 Query 25494 CCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACC 25553 || ||||| | ||| ||||||| ||||| || |||| ||||||||||||||| || Sbjct 53902 CCCGTAACATGAGCGATCATGTGAGTGAGAAGGGCGTAGGAGGCGATGTTAAAGGGCACG 53961 Query 25554 CCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 25601 || | |||||||| | | ||||||||| ||||| || ||||| || Sbjct 53962 CCCAGGCCCATGTCGGCGC-TCCTCTGGTACAGCTGGCAGGAGAGTTC 54008 >seq22465 Length=63631 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 40785 TTAAACAATATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACG 40844 || |||| | ||||||||||||||| | ||| || |||||||| ||||| || || Sbjct 17349 TTGAACAGAACGACGCCGAGGTTGCCGCGGTAATCCTCATCCACCACACCGGCGCCCACA 17290 Query 40845 TCTATAAAATTTTCCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGG 40904 || || || || | || |||||| ||||||| || ||||| | ||||||| |||| Sbjct 17289 TCGATGAAGTTCTTCACGGCCAGTCCGGACCGTGGGGCCACACGGCCGTAGGAGCCCTCC 17230 Query 40905 GGCATCTTTACGGCCAGGTCCGTCTTTACCAGGGCC 40940 || | || || |||||| ||||| || | |||| Sbjct 17229 GGAACCTGCACCTGCAGGTCGGTCTTCACGATGGCC 17194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340043005501287