Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq22266 104 2e-17
seq5502 98.7 8e-16
seq22190 93.3 4e-14
>seq22266
Length=384576
Score = 104 bits (114), Expect = 2e-17
Identities = 162/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || |||| | | ||| | |||||| || |||||| || |||||||| || |
Sbjct 109156 ACCACCACGCAGGCGGAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 109215
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| || | |||||||||||||| ||| || | || | |||||||||||| ||
Sbjct 109216 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 109275
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||||||| || || ||| | | | | ||||| || | || ||||
Sbjct 109276 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCAC 109335
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||| | || ||||| || |||||||| |||||||| ||||| ||||| |||
Sbjct 109336 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATGGTG 109387
>seq5502
Length=68615
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574
|| || || ||||| || ||||||||| ||||||||||||| ||| || |||||
Sbjct 6747 AATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGACAACGTACGTCCGTCC 6806
Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634
||||| ||||| ||| | | ||||| ||||||||||| || | || |||||||||
Sbjct 6807 TCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 6866
Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
|| || ||| | | | | || || |||| | ||| ||| | || ||||||
Sbjct 6867 TGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCGACCTCAAGGGTAATGGTT 6926
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || || || || ||||| || || |||||
Sbjct 6927 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958
>seq22190
Length=927835
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
|| ||||| | ||| |||||| || |||||||| || | ||| || ||||||||
Sbjct 837733 ACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCC 837674
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
| |||||| || | | || ||||||||||| || || | | ||||||||||
Sbjct 837673 AACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 837614
Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697
||||| ||| | | | |||||||||| | ||| ||| | || ||||| ||
Sbjct 837613 ATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTG 837554
Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| |||||||| || ||||| ||||||||
Sbjct 837553 CCAGTGAGAGTCTTGACAAAGATCTGCAT 837525
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/210 (70%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || || || || |||||| || |||||||| || | ||| || |||||||
Sbjct 837506 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTC 837447
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|| |||||| || | | || ||||||||||| || || | | ||||||||||
Sbjct 837446 CAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTG 837387
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
||||| ||| | | | |||||||||| | ||| ||| | || ||||| ||
Sbjct 837386 GATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTC-AAGGTGATGGTCTT 837328
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| |||||||| || ||||| ||||||||
Sbjct 837327 GCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || || || || |||||| || |||||||| || | ||| || | || ||
Sbjct 837279 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTC 837220
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||| || ||| || | || || |||||||| || || | | |||||||||
Sbjct 837219 CAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTG 837160
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||| | | | |||||||||| || ||| ||| | || ||||| ||
Sbjct 837159 GATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTT 837100
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| | ||| ||||||||||| |||||
Sbjct 837099 GCCGGTCAAAGTCTTCACAAAAATTTGCAT 837070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421134047276819
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |