Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq22266 104 2e-17 seq5502 98.7 8e-16 seq22190 93.3 4e-14 >seq22266 Length=384576 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| | |||||| || |||||| || |||||||| || | Sbjct 109156 ACCACCACGCAGGCGGAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 109215 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | |||||||||||||| ||| || | || | |||||||||||| || Sbjct 109216 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 109275 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || || ||| | | | | ||||| || | || |||| Sbjct 109276 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCAC 109335 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| || |||||||| |||||||| ||||| ||||| ||| Sbjct 109336 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATGGTG 109387 >seq5502 Length=68615 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || || ||||| || ||||||||| ||||||||||||| ||| || ||||| Sbjct 6747 AATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGACAACGTACGTCCGTCC 6806 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 ||||| ||||| ||| | | ||||| ||||||||||| || | || ||||||||| Sbjct 6807 TCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 6866 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | | || || |||| | ||| ||| | || |||||| Sbjct 6867 TGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCGACCTCAAGGGTAATGGTT 6926 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || || ||||| || || ||||| Sbjct 6927 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958 >seq22190 Length=927835 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || ||||| | ||| |||||| || |||||||| || | ||| || |||||||| Sbjct 837733 ACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCC 837674 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | |||||| || | | || ||||||||||| || || | | |||||||||| Sbjct 837673 AACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 837614 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||| | | | |||||||||| | ||| ||| | || ||||| || Sbjct 837613 ATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTG 837554 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || ||||| |||||||| Sbjct 837553 CCAGTGAGAGTCTTGACAAAGATCTGCAT 837525 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || || |||||| || |||||||| || | ||| || ||||||| Sbjct 837506 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTC 837447 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || | | || ||||||||||| || || | | |||||||||| Sbjct 837446 CAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTG 837387 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||||| ||| | | | |||||||||| | ||| ||| | || ||||| || Sbjct 837386 GATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTC-AAGGTGATGGTCTT 837328 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || ||||| |||||||| Sbjct 837327 GCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || || |||||| || |||||||| || | ||| || | || || Sbjct 837279 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTC 837220 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||| || ||| || | || || |||||||| || || | | ||||||||| Sbjct 837219 CAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTG 837160 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | |||||||||| || ||| ||| | || ||||| || Sbjct 837159 GATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTT 837100 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | ||| ||||||||||| ||||| Sbjct 837099 GCCGGTCAAAGTCTTCACAAAAATTTGCAT 837070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421134047276819