Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq20823 125 4e-24
seq22270 123 1e-23
seq22286 120 2e-22
seq22312 118 6e-22
seq2225 118 6e-22
seq14122 109 3e-19
>seq20823
Length=52897
Score = 125 bits (138), Expect = 4e-24
Identities = 82/91 (90%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 49052 AAGAAAAAATTATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 48993
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531
|||||||| ||||||||||||||||||||||
Sbjct 48992 GACGCTCTAACCAACTGAGCTAATGGGCCGT 48962
>seq22270
Length=590517
Score = 123 bits (136), Expect = 1e-23
Identities = 86/97 (89%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|||||| ||||||| | |||||||||| |||||||||| |||||||||||||||||
Sbjct 10836 AATTAA-AAAAAATAATCATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 10894
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533
|||||||||||| |||||||||||||||||||| |||
Sbjct 10895 GCACGACGCTCTAACCAACTGAGCTAATGGGCCTTCG 10931
>seq22286
Length=317006
Score = 120 bits (132), Expect = 2e-22
Identities = 85/98 (87%), Gaps = 4/98 (4%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAATT----GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492
||||| ||||||| | ||| ||||||||| |||||||||| |||||||||||||
Sbjct 120428 AATTATAAAAAAATAATATTTAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTT 120369
Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
|||||||||||||||| |||||||||||||||||||||
Sbjct 120368 ATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 120331
>seq22312
Length=404719
Score = 118 bits (130), Expect = 6e-22
Identities = 78/86 (91%), Gaps = 1/86 (1%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 373939 AAAAAATTAG-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 373881
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 373880 GCTCTAACCAACTGAGCTAATGGGCC 373855
Score = 116 bits (128), Expect = 2e-21
Identities = 82/93 (88%), Gaps = 1/93 (1%)
Strand=Plus/Minus
Query 11438 ATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
||||| ||||| | | | |||||||||| |||||||||| |||||||||||||||||
Sbjct 374283 ATTAAAAAAAATTTAGCTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 374224
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||||||||
Sbjct 374223 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 374191
Score = 116 bits (128), Expect = 2e-21
Identities = 77/86 (90%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 374555 AAAAAAACGGCTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 374614
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 374615 GCTCTAACCAACTGAGCTAATGGGCC 374640
Score = 113 bits (124), Expect = 2e-20
Identities = 82/95 (86%), Gaps = 2/95 (2%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
||| |||||||| || | |||||||||| |||||||||| |||||||||||||||
Sbjct 373772 AATCAATAAAAATATAATTAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 373713
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||| |||| |||||||||||||||
Sbjct 373712 TAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 373678
>seq2225
Length=52153
Score = 118 bits (130), Expect = 6e-22
Identities = 84/97 (87%), Gaps = 4/97 (4%)
Strand=Plus/Plus
Query 11438 ATTAATAAAAAA----TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493
|||||||||||| | | ||||||||||| |||||||||| ||||||||||||||
Sbjct 40592 ATTAATAAAAAAAATTTAGAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTA 40651
Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||||||||||| |||| ||||||||||||||||
Sbjct 40652 TTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 40688
Score = 116 bits (128), Expect = 2e-21
Identities = 77/86 (90%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 50479 AAAAAATCTGACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 50420
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||||||||
Sbjct 50419 GCTCTAACCAGCTGAGCTAATGGGCC 50394
Score = 113 bits (124), Expect = 2e-20
Identities = 76/86 (88%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||| ||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 49320 AAAAATTCATCCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 49379
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||||||||
Sbjct 49380 GCTCTAACCAGCTGAGCTAATGGGCC 49405
>seq14122
Length=6581
Score = 109 bits (120), Expect = 3e-19
Identities = 79/91 (87%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 11441 AATAAAAAA--TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
|| |||||| ||| |||||||||| |||||||||| |||||||||||||||||||
Sbjct 3931 AACAAAAAAGTTCATCCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 3990
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||| |||| |||||||||||||||
Sbjct 3991 ACGACGCTCTAACCAGCTGAGCTAATGGGCC 4021
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261418477581244
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |