Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq20823 125 4e-24 seq22270 123 1e-23 seq22286 120 2e-22 seq22312 118 6e-22 seq2225 118 6e-22 seq14122 109 3e-19 >seq20823 Length=52897 Score = 125 bits (138), Expect = 4e-24 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 49052 AAGAAAAAATTATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 48993 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| |||||||||||||||||||||| Sbjct 48992 GACGCTCTAACCAACTGAGCTAATGGGCCGT 48962 >seq22270 Length=590517 Score = 123 bits (136), Expect = 1e-23 Identities = 86/97 (89%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| ||||||| | |||||||||| |||||||||| ||||||||||||||||| Sbjct 10836 AATTAA-AAAAAATAATCATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 10894 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||||||||||| |||||||||||||||||||| ||| Sbjct 10895 GCACGACGCTCTAACCAACTGAGCTAATGGGCCTTCG 10931 >seq22286 Length=317006 Score = 120 bits (132), Expect = 2e-22 Identities = 85/98 (87%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATT----GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||||| ||||||| | ||| ||||||||| |||||||||| ||||||||||||| Sbjct 120428 AATTATAAAAAAATAATATTTAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTT 120369 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||| ||||||||||||||||||||| Sbjct 120368 ATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 120331 >seq22312 Length=404719 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 373939 AAAAAATTAG-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 373881 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 373880 GCTCTAACCAACTGAGCTAATGGGCC 373855 Score = 116 bits (128), Expect = 2e-21 Identities = 82/93 (88%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||| ||||| | | | |||||||||| |||||||||| ||||||||||||||||| Sbjct 374283 ATTAAAAAAAATTTAGCTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 374224 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 374223 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 374191 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 374555 AAAAAAACGGCTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 374614 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 374615 GCTCTAACCAACTGAGCTAATGGGCC 374640 Score = 113 bits (124), Expect = 2e-20 Identities = 82/95 (86%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||| |||||||| || | |||||||||| |||||||||| ||||||||||||||| Sbjct 373772 AATCAATAAAAATATAATTAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 373713 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| ||||||||||||||| Sbjct 373712 TAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 373678 >seq2225 Length=52153 Score = 118 bits (130), Expect = 6e-22 Identities = 84/97 (87%), Gaps = 4/97 (4%) Strand=Plus/Plus Query 11438 ATTAATAAAAAA----TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 |||||||||||| | | ||||||||||| |||||||||| |||||||||||||| Sbjct 40592 ATTAATAAAAAAAATTTAGAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTA 40651 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||| |||| |||||||||||||||| Sbjct 40652 TTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 40688 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||||| | |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 50479 AAAAAATCTGACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 50420 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| ||||||||||||||| Sbjct 50419 GCTCTAACCAGCTGAGCTAATGGGCC 50394 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 49320 AAAAATTCATCCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 49379 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| ||||||||||||||| Sbjct 49380 GCTCTAACCAGCTGAGCTAATGGGCC 49405 >seq14122 Length=6581 Score = 109 bits (120), Expect = 3e-19 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11441 AATAAAAAA--TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || |||||| ||| |||||||||| |||||||||| ||||||||||||||||||| Sbjct 3931 AACAAAAAAGTTCATCCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 3990 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| ||||||||||||||| Sbjct 3991 ACGACGCTCTAACCAGCTGAGCTAATGGGCC 4021 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261418477581244