Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5502 132 4e-26 seq22190 131 2e-25 seq20501 131 2e-25 seq22266 87.8 2e-12 >seq5502 Length=68615 Score = 132 bits (146), Expect = 4e-26 Identities = 162/219 (74%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGG 94850 ||||| |||||||| | || || |||||||| | ||| ||||| || || || | Sbjct 6744 CGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGACAACGTACGTCCG 6803 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||||| || || ||| |||||||||||| ||||||||||| |||||||| || | Sbjct 6804 --TCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGAATACCCTCCT 6861 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || ||||| || ||| ||||| | | ||||| |||| || | Sbjct 6862 TGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCGACCTCAAGGGTAA 6921 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||||| ||||| || || ||||| ||||| ||||||| Sbjct 6922 TGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATGC 6960 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||| | | || | ||||||||||||||| || ||||| || | |||||||||| Sbjct 5819 TCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGA 5878 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || |||| ||| |||| ||| || ||| | ||||| || | ||||||||||| || Sbjct 5879 CAGAGTGCGTCCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 5938 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| || || ||||| | || || ||||| ||| | | || |||| | | ||||| Sbjct 5939 AATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGAC 5998 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||||||||| || | || || || ||||| ||||||| Sbjct 5999 TTCCAAGGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCATGC 6048 Score = 109 bits (120), Expect = 5e-19 Identities = 153/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | || |||||||| || | ||| || ||| | || ||| | ||| | Sbjct 6066 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG--AAAGGGTTCGTCCATCTT 6123 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| || ||| ||||||| | | ||||||||||| |||||||| || ||||| | Sbjct 6124 CAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCT 6183 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||| || ||| ||||| | | || || |||| || ||||||| Sbjct 6184 GGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCCACCTCAAGGGTAATGGTTT 6243 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | ||||| || || ||||| ||||| ||||||| Sbjct 6244 TGCCAGTCAGGGTCTTCACGAAGATTTGCATGC 6276 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || |||||||| || | ||| || ||| | ||| | ||| ||| Sbjct 6522 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCC 6581 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| ||||| | || || | | ||||||||||| ||||| || || || || | | Sbjct 6582 AACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 6641 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || | | ||||||| | || || || | |||||||||||| Sbjct 6642 ATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGAGTGATGGTTTTT 6701 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || | || || || ||||| ||||||| Sbjct 6702 CCGGTCAAGGTCTTTACGAAGATTTGCATGC 6732 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | || |||||||| || | ||| || ||| | || ||| | ||| | Sbjct 7206 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG--AAAGGGTTCGTCCATCTT 7263 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| || ||| ||||||| | | ||||| ||||| ||||| || || || || | Sbjct 7264 CAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCT 7323 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || ||||| || ||| || || | | || || || | || ||||| | Sbjct 7324 GAATCTTGGCCTTTACATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCT 7383 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| | || ||||||||||||||||| Sbjct 7384 TGCCAGTCAATGTCTTCACAAAGATCTGCAT 7414 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || |||||||| || | ||| || || | ||| | ||| ||| Sbjct 6294 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCC 6353 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || ||||| | || || | | |||||||||||| || || || || ||||| | Sbjct 6354 AATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGG 6413 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || | | ||||| | | | || || || | ||| ||||| || Sbjct 6414 ATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAACCTCCAGCGTAATGGTCTTG 6473 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || || || ||||||||||||| Sbjct 6474 CCAGTCAGGGTCTTTACGAAGATCTGCATGC 6504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || |||||||| || | ||| || || | ||| | ||| ||| Sbjct 6978 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCC 7037 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| ||||| | || || | | ||||||||||| ||||| || || || || | | Sbjct 7038 AACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 7097 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || | | ||||||| | ||||| || | |||||||| ||| Sbjct 7098 ATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCGACTTCCAAGGTGATGGTCTTT 7157 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || | || || || ||||| ||||||| Sbjct 7158 CCGGTCAAGGTCTTTACGAAGATTTGCATGC 7188 >seq22190 Length=927835 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||||||| || ||||| || | ||| || ||| || ||| Sbjct 837739 CGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCG 837680 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| ||| || || ||||||| || | ||||| ||||| ||||| ||||| ||| Sbjct 837679 TCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTG 837620 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||||| ||| | | || || | | | ||||| |||| |||||| Sbjct 837619 TCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATG 837560 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| ||||| || |||||||||||||||| Sbjct 837559 GTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCATGC 837523 Score = 127 bits (140), Expect = 2e-24 Identities = 156/212 (74%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||||| ||||| || | ||| || ||| || ||| ||||| Sbjct 837506 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTC 837447 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || || ||||||| || | ||||| ||||| ||||| ||||| ||||| | Sbjct 837446 CAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTG 837387 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| ||||| ||| ||| || || | | | ||||| |||| |||||||| || Sbjct 837386 GATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAG-GTGATGGTCTT 837328 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| ||||| || |||||||||||||||| Sbjct 837327 GCCAGTGAGAGTCTTGACAAAGATCTGCATGC 837296 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||||| ||||| || | ||| || ||| || ||| ||| || Sbjct 837279 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTC 837220 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||||||||||| | ||||| |||| ||||| ||||| ||||| || || ||||| | Sbjct 837219 CAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTG 837160 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| ||| | | || || | | || || || | |||||||| || Sbjct 837159 GATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTT 837100 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || | ||| |||||||| || |||||| Sbjct 837099 GCCGGTCAAAGTCTTCACAAAAATTTGCATG 837069 >seq20501 Length=31302 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||||||| || ||||| || | |||||| || | || | | Sbjct 11129 CGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCA 11188 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || | ||||| | | ||||||||||||||||| ||||||||| Sbjct 11189 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 11248 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || || ||||| ||| |||||| | | ||||| |||| |||||| Sbjct 11249 TCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATG 11308 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || || ||||||||||| Sbjct 11309 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11343 >seq22266 Length=384576 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| || | || || ||||| || | ||| || || || ||| | |||||| Sbjct 109174 CACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTC 109233 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||||||||| ||||| || || ||||| | Sbjct 109234 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 109293 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| || ||| ||||| | | || || || | |||||||| || Sbjct 109294 GATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTT 109353 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || |||||||| || || |||||| Sbjct 109354 GCCGGTGAGGGTTTTCACGAAAATTTGCATG 109384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448163330538840