Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq18365 187 4e-43 seq18431 178 2e-40 seq7461 152 8e-33 seq6939 147 3e-31 seq18533 129 9e-26 seq22268 102 1e-17 >seq18365 Length=1213 Score = 187 bits (206), Expect = 4e-43 Identities = 202/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || ||||||||||| || || || |||||||| || Sbjct 1113 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATTACGAAGCCAGCCAT 1054 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||||||||| || || ||||| |||| ||||| | || || || | Sbjct 1053 ACGCCGTTTGGCTCGTCGTGGCGGTGTGAAGCGCATCTCCGGATTAATTTACGAGGAAAC 994 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | ||||| ||| |||||||| |||||| || ||| ||||| Sbjct 993 ACGTGGTGTTCTGAAGGTGTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 934 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||||||||| |||||||| |||| || || |||| | ||||| Sbjct 933 ACACGCCAAGAGGAAGACTGTCACAGCCATGGATGTCGTGTACGCCCTGAAGAGGCAAGG 874 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 873 CCGCACCCTGTACGGTTTCGGCGGTTAA 846 >seq18431 Length=2268 Score = 178 bits (196), Expect = 2e-40 Identities = 199/265 (75%), Gaps = 1/265 (0%) Strand=Plus/Plus Query 16436 AAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCG 16494 ||||||||||| || | || || ||||||||||| || || || |||||||| || || Sbjct 1647 AAGCGTCATCGACAAAGTGCTGCGTGATAACATCCAGGGTATTACGAAGCCAGCCATACG 1706 Query 16495 TCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 ||| ||||||||||||| || || ||||| |||| ||||| | || || || | || Sbjct 1707 CCGTTTGGCTCGTCGTGGCGGTGTGAAGCGCATCTCCGGATTAATTTACGAGGAAACACG 1766 Query 16555 TGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614 || |||| ||||| | ||||| ||| |||||||| |||||| || ||| ||||| || Sbjct 1767 TGGTGTTCTGAAGGTGTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGAACA 1826 Query 16615 CGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| || | ||||||||||| |||||||| |||| || || |||| | |||||||| Sbjct 1827 CGCCAAGAGGAAGACTGTCACAGCCATGGATGTCGTGTACGCCCTGAAGAGGCAAGGCCG 1886 Query 16675 TAAGATTTATGGTTTTGGAAGTTAA 16699 | | || ||||| || ||||| Sbjct 1887 CACCCTGTACGGTTTCGGCGGTTAA 1911 >seq7461 Length=1008 Score = 152 bits (168), Expect = 8e-33 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || ||||||||||| || || || |||||||| || Sbjct 492 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATTACGAAGCCAGCCAT 551 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||||||||| || || ||||| |||| ||||| | || || || | Sbjct 552 ACGCCGTTTGGCTCGTCGTGGCGGTGTGAAGCGCATCTCCGGATTAATTTACGAGGAAAC 611 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | ||||| ||| |||||||| |||||| || ||| ||||| Sbjct 612 ACGTGGTGTTCTGAAGGTGTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 671 Query 16612 GCACGCTAAACGTAAGACTGTCAC 16635 ||||| || | |||||||| || Sbjct 672 ACACGCCAAGAGGAAGACTGTTAC 695 >seq6939 Length=13554 Score = 147 bits (162), Expect = 3e-31 Identities = 190/261 (73%), Gaps = 1/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||| ||| | || || ||||||||||| | || || |||||||| || Sbjct 13225 CGCCAAGCGTCATGGCAAAGTGCTGCGTGATAACATCCAGAGTATTACGAAGCCAGCCAT 13166 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||| ||||| || || ||||| |||| ||| | | || || || | Sbjct 13165 ACGCCGT-TGGCTCGCCGTGGCGGTGTGAAGCGCATCTCCGGACTAATTTACGAGGAAAC 13107 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | ||||| ||| |||||||| |||||| || ||| ||||| Sbjct 13106 ACGTGGTGTTCTGAAGGTGTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 13047 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | | ||||||||| |||||||| ||| || || |||| | |||| Sbjct 13046 ACACGCCAAGAGGACGACTGTCACAGCCATGGATGACGTGTACGCCCTGAAGAGGTAAGG 12987 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 12986 CCGCACCCTGTACGGTTTCGG 12966 >seq18533 Length=1334 Score = 129 bits (142), Expect = 9e-26 Identities = 188/268 (70%), Gaps = 11/268 (4%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || |||||||||| || | || |||||||| || Sbjct 1081 CGCCAAGCGTCATCGCAAAGTGCTGCGTAATAACATCCAGGGTAATACGAAGCCAGCCAT 1022 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||| ||||| || || ||||| |||| ||| | | || || || | Sbjct 1021 ACGCCGTTTGGCTCGCCGTGGCGGTGTGAAGCGCATCTCCGGACTAATTTACGAGGAAAC 962 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| ||| |||||||| | |||| ||| ||| ||||| Sbjct 961 ACGTGGTG-----------TTCCTGGAGAACGTTATCCGTAATGCCGTCCCCTACACCGA 913 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||||| |||||||| |||| || || |||| | ||||| Sbjct 912 ACAAGCCAAGAGGAAGACTGTCATAGCCATGGATGTCGTGTACGCCCTGAAGAGGCAAGG 853 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 852 CCGCACCGTGTACGGTTTCGGCGGTTAA 825 >seq22268 Length=123954 Score = 102 bits (112), Expect = 1e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| || || ||||||||||| || ||||||||||| ||||| Sbjct 50304 CGCCAAGCGTCATCGCAAGGTGCTCCGTGATAACATCCAGGGTATCACCAAGCCGGCTAT 50363 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||| ||||| || |||||| ||||||| ||| | || || || | Sbjct 50364 TCGCCGATTGGCCCGTCGCGGTGGTGTAAAGCGTATCTCTGGCTTGATTTACGAGGAAAC 50423 Query 16552 TCGTGATGT 16560 ||| | ||| Sbjct 50424 TCGCGGTGT 50432 Score = 89.7 bits (98), Expect = 8e-14 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16566 AGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTA 16625 || ||||||| ||| |||||||| ||| ||| || |||||||||||||||||| || | Sbjct 50499 AGGTCTTCCTTGAGAACGTTATCCGTGACGCTGTCACCTATACCGAGCACGCTAAGCGCA 50558 Query 16626 AGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATG 16685 | || || ||| ||||||| | ||||| || | || || || || || | | || | Sbjct 50559 AAACCGTGACCGCCATGGACGTGGTCTACGCTCTCAAGCGCCAGGGACGCACCCTCTACG 50618 Query 16686 GTTTTGGAAGTTAA 16699 ||||||| ||||| Sbjct 50619 GTTTTGGCGGTTAA 50632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79054336428567