Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq18365 187 4e-43
seq18431 178 2e-40
seq7461 152 8e-33
seq6939 147 3e-31
seq18533 129 9e-26
seq22268 102 1e-17
>seq18365
Length=1213
Score = 187 bits (206), Expect = 4e-43
Identities = 202/268 (75%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||||| | || || ||||||||||| || || || |||||||| ||
Sbjct 1113 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATTACGAAGCCAGCCAT 1054
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| ||| ||||||||||||| || || ||||| |||| ||||| | || || || |
Sbjct 1053 ACGCCGTTTGGCTCGTCGTGGCGGTGTGAAGCGCATCTCCGGATTAATTTACGAGGAAAC 994
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| |||| ||||| | ||||| ||| |||||||| |||||| || ||| |||||
Sbjct 993 ACGTGGTGTTCTGAAGGTGTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 934
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| || | ||||||||||| |||||||| |||| || || |||| | |||||
Sbjct 933 ACACGCCAAGAGGAAGACTGTCACAGCCATGGATGTCGTGTACGCCCTGAAGAGGCAAGG 874
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | || ||||| || |||||
Sbjct 873 CCGCACCCTGTACGGTTTCGGCGGTTAA 846
>seq18431
Length=2268
Score = 178 bits (196), Expect = 2e-40
Identities = 199/265 (75%), Gaps = 1/265 (0%)
Strand=Plus/Plus
Query 16436 AAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCG 16494
||||||||||| || | || || ||||||||||| || || || |||||||| || ||
Sbjct 1647 AAGCGTCATCGACAAAGTGCTGCGTGATAACATCCAGGGTATTACGAAGCCAGCCATACG 1706
Query 16495 TCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554
||| ||||||||||||| || || ||||| |||| ||||| | || || || | ||
Sbjct 1707 CCGTTTGGCTCGTCGTGGCGGTGTGAAGCGCATCTCCGGATTAATTTACGAGGAAACACG 1766
Query 16555 TGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614
|| |||| ||||| | ||||| ||| |||||||| |||||| || ||| ||||| ||
Sbjct 1767 TGGTGTTCTGAAGGTGTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGAACA 1826
Query 16615 CGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
||| || | ||||||||||| |||||||| |||| || || |||| | ||||||||
Sbjct 1827 CGCCAAGAGGAAGACTGTCACAGCCATGGATGTCGTGTACGCCCTGAAGAGGCAAGGCCG 1886
Query 16675 TAAGATTTATGGTTTTGGAAGTTAA 16699
| | || ||||| || |||||
Sbjct 1887 CACCCTGTACGGTTTCGGCGGTTAA 1911
>seq7461
Length=1008
Score = 152 bits (168), Expect = 8e-33
Identities = 156/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||||| | || || ||||||||||| || || || |||||||| ||
Sbjct 492 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAGGGTATTACGAAGCCAGCCAT 551
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| ||| ||||||||||||| || || ||||| |||| ||||| | || || || |
Sbjct 552 ACGCCGTTTGGCTCGTCGTGGCGGTGTGAAGCGCATCTCCGGATTAATTTACGAGGAAAC 611
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| |||| ||||| | ||||| ||| |||||||| |||||| || ||| |||||
Sbjct 612 ACGTGGTGTTCTGAAGGTGTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 671
Query 16612 GCACGCTAAACGTAAGACTGTCAC 16635
||||| || | |||||||| ||
Sbjct 672 ACACGCCAAGAGGAAGACTGTTAC 695
>seq6939
Length=13554
Score = 147 bits (162), Expect = 3e-31
Identities = 190/261 (73%), Gaps = 1/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||| ||| | || || ||||||||||| | || || |||||||| ||
Sbjct 13225 CGCCAAGCGTCATGGCAAAGTGCTGCGTGATAACATCCAGAGTATTACGAAGCCAGCCAT 13166
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| ||| ||||||| ||||| || || ||||| |||| ||| | | || || || |
Sbjct 13165 ACGCCGT-TGGCTCGCCGTGGCGGTGTGAAGCGCATCTCCGGACTAATTTACGAGGAAAC 13107
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| |||| ||||| | ||||| ||| |||||||| |||||| || ||| |||||
Sbjct 13106 ACGTGGTGTTCTGAAGGTGTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 13047
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| || | | ||||||||| |||||||| ||| || || |||| | ||||
Sbjct 13046 ACACGCCAAGAGGACGACTGTCACAGCCATGGATGACGTGTACGCCCTGAAGAGGTAAGG 12987
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | || ||||| ||
Sbjct 12986 CCGCACCCTGTACGGTTTCGG 12966
>seq18533
Length=1334
Score = 129 bits (142), Expect = 9e-26
Identities = 188/268 (70%), Gaps = 11/268 (4%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||||| | || || |||||||||| || | || |||||||| ||
Sbjct 1081 CGCCAAGCGTCATCGCAAAGTGCTGCGTAATAACATCCAGGGTAATACGAAGCCAGCCAT 1022
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| ||| ||||||| ||||| || || ||||| |||| ||| | | || || || |
Sbjct 1021 ACGCCGTTTGGCTCGCCGTGGCGGTGTGAAGCGCATCTCCGGACTAATTTACGAGGAAAC 962
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| || ||||| ||| |||||||| | |||| ||| ||| |||||
Sbjct 961 ACGTGGTG-----------TTCCTGGAGAACGTTATCCGTAATGCCGTCCCCTACACCGA 913
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || || | |||||||||| |||||||| |||| || || |||| | |||||
Sbjct 912 ACAAGCCAAGAGGAAGACTGTCATAGCCATGGATGTCGTGTACGCCCTGAAGAGGCAAGG 853
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | || ||||| || |||||
Sbjct 852 CCGCACCGTGTACGGTTTCGGCGGTTAA 825
>seq22268
Length=123954
Score = 102 bits (112), Expect = 1e-17
Identities = 100/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||||| || || ||||||||||| || ||||||||||| |||||
Sbjct 50304 CGCCAAGCGTCATCGCAAGGTGCTCCGTGATAACATCCAGGGTATCACCAAGCCGGCTAT 50363
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || |||| ||||| ||||| || |||||| ||||||| ||| | || || || |
Sbjct 50364 TCGCCGATTGGCCCGTCGCGGTGGTGTAAAGCGTATCTCTGGCTTGATTTACGAGGAAAC 50423
Query 16552 TCGTGATGT 16560
||| | |||
Sbjct 50424 TCGCGGTGT 50432
Score = 89.7 bits (98), Expect = 8e-14
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16566 AGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTA 16625
|| ||||||| ||| |||||||| ||| ||| || |||||||||||||||||| || |
Sbjct 50499 AGGTCTTCCTTGAGAACGTTATCCGTGACGCTGTCACCTATACCGAGCACGCTAAGCGCA 50558
Query 16626 AGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATG 16685
| || || ||| ||||||| | ||||| || | || || || || || | | || |
Sbjct 50559 AAACCGTGACCGCCATGGACGTGGTCTACGCTCTCAAGCGCCAGGGACGCACCCTCTACG 50618
Query 16686 GTTTTGGAAGTTAA 16699
||||||| |||||
Sbjct 50619 GTTTTGGCGGTTAA 50632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79054336428567
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |