Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq22430 132 5e-26
seq20501 82.4 7e-11
>seq22430
Length=315411
Score = 132 bits (146), Expect = 5e-26
Identities = 136/178 (76%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776
|||||||| || ||||| | | |||||||||| |||||||||||||||||||| |||||
Sbjct 156992 GAGGGTAAGATGCACGGCTTCTTACGCATGTATTGGGCCAAAAAGATTCTCGAATGGACC 157051
Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836
|| || || |||||| | |||||| | || || ||||| | || || |||||
Sbjct 157052 GCCACCCCGGAACAGGCGTTGGAGTATGCGATCCTACTGAACGACAAGTATAGCCTCGAT 157111
Query 71837 GGTCGCGATCCTAACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATA 71894
|| |||||||| ||||| ||||| || || |||||| ||| ||||| | || ||||
Sbjct 157112 GGACGCGATCCCAACGGCTATGTGGGCTGTATGTGGTCCATCGGCGGTGTCCATGATA 157169
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/137 (74%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 66538 TTCATACGCGTATACTGGGCCAAAAAGATTTTGGAGTGGACGTCAACACCGGAAGAGGCT 66597
||| ||||| | || ||||||||||||||| | || ||||| | || |||||| ||||
Sbjct 157010 TTCTTACGCATGTATTGGGCCAAAAAGATTCTCGAATGGACCGCCACCCCGGAACAGGCG 157069
Query 66598 TTGAATCGTGCGAT-TTACTTGAATCAAAAGTATGCTGTCGACGGTTGCGATCCCAGCGG 66656
||| | |||||| ||| |||| | |||||| |||| || ||||||||| |||
Sbjct 157070 TTGGAGTATGCGATCCTAC-TGAACGACAAGTATAGCCTCGATGGACGCGATCCCAACGG 157128
Query 66657 TTATGTAGGATGTTTGT 66673
||||| || ||| |||
Sbjct 157129 CTATGTGGGCTGTATGT 157145
>seq20501
Length=31302
Score = 82.4 bits (90), Expect = 7e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| ||||| | |||||| |||||| ||||||||||| || ||||| |||||
Sbjct 11283 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 11224
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | || || | || ||||| || || ||||||| | | | || |||||||||
Sbjct 11223 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAAC 11164
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981
||||| || || || ||| | || |||| |||
Sbjct 11163 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTG 11131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478525867533680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |