Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq22430 132 5e-26 seq20501 82.4 7e-11 >seq22430 Length=315411 Score = 132 bits (146), Expect = 5e-26 Identities = 136/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 |||||||| || ||||| | | |||||||||| |||||||||||||||||||| ||||| Sbjct 156992 GAGGGTAAGATGCACGGCTTCTTACGCATGTATTGGGCCAAAAAGATTCTCGAATGGACC 157051 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 || || || |||||| | |||||| | || || ||||| | || || ||||| Sbjct 157052 GCCACCCCGGAACAGGCGTTGGAGTATGCGATCCTACTGAACGACAAGTATAGCCTCGAT 157111 Query 71837 GGTCGCGATCCTAACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATA 71894 || |||||||| ||||| ||||| || || |||||| ||| ||||| | || |||| Sbjct 157112 GGACGCGATCCCAACGGCTATGTGGGCTGTATGTGGTCCATCGGCGGTGTCCATGATA 157169 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 66538 TTCATACGCGTATACTGGGCCAAAAAGATTTTGGAGTGGACGTCAACACCGGAAGAGGCT 66597 ||| ||||| | || ||||||||||||||| | || ||||| | || |||||| |||| Sbjct 157010 TTCTTACGCATGTATTGGGCCAAAAAGATTCTCGAATGGACCGCCACCCCGGAACAGGCG 157069 Query 66598 TTGAATCGTGCGAT-TTACTTGAATCAAAAGTATGCTGTCGACGGTTGCGATCCCAGCGG 66656 ||| | |||||| ||| |||| | |||||| |||| || ||||||||| ||| Sbjct 157070 TTGGAGTATGCGATCCTAC-TGAACGACAAGTATAGCCTCGATGGACGCGATCCCAACGG 157128 Query 66657 TTATGTAGGATGTTTGT 66673 ||||| || ||| ||| Sbjct 157129 CTATGTGGGCTGTATGT 157145 >seq20501 Length=31302 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 11283 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 11224 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || ||||| || || ||||||| | | | || ||||||||| Sbjct 11223 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAAC 11164 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 ||||| || || || ||| | || |||| ||| Sbjct 11163 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTG 11131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478525867533680