Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq20501 91.5 1e-13
seq5502 84.2 2e-11
>seq20501
Length=31302
Score = 91.5 bits (100), Expect = 1e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| ||||| | |||||| |||||| ||||||||||| || ||||| |||||
Sbjct 11283 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 11224
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | ||||| | || |||||||| || ||||||| | | | | || || ||||||
Sbjct 11223 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAAC 11164
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
||||| || || || || | || || |||
Sbjct 11163 ATTCAGAAGGAGTCCACTTTGCACTTGGTG 11134
>seq5502
Length=68615
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || ||||| || || || |||||| | || ||| | |||||||| ||
Sbjct 6046 ATGCAAATCTTCGTAAAGACCTTGACCGGAAAAACCATCACCTTGGAAGTCGAACCCTCT 5987
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| ||||| ||| | || || ||||| ||||| || || || || || |||||
Sbjct 5986 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 5927
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAAC-GTCAGCGATTATA 24168
||| | |||| | || ||||||||| | ||||||| || | | ||| ||||||||
Sbjct 5926 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGACGCACTCTGTC--CGATTATA 5869
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|||| || || || || || | || || |||
Sbjct 5868 ACATCCAGAAGGAGTCCACTTTGCACTTGGTG 5837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429816431976945
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |