Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq20501 91.5 1e-13 seq5502 84.2 2e-11 >seq20501 Length=31302 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 11283 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 11224 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||| || ||||||| | | | | || || |||||| Sbjct 11223 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAAC 11164 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || | || || ||| Sbjct 11163 ATTCAGAAGGAGTCCACTTTGCACTTGGTG 11134 >seq5502 Length=68615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || ||||| || || || |||||| | || ||| | |||||||| || Sbjct 6046 ATGCAAATCTTCGTAAAGACCTTGACCGGAAAAACCATCACCTTGGAAGTCGAACCCTCT 5987 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || ||||| ||||| || || || || || ||||| Sbjct 5986 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 5927 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAAC-GTCAGCGATTATA 24168 ||| | |||| | || ||||||||| | ||||||| || | | ||| |||||||| Sbjct 5926 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGACGCACTCTGTC--CGATTATA 5869 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||| || || || || || | || || ||| Sbjct 5868 ACATCCAGAAGGAGTCCACTTTGCACTTGGTG 5837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429816431976945