Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq22190 114 1e-20 seq22266 96.9 3e-15 seq5502 84.2 2e-11 >seq22190 Length=927835 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | ||| |||| ||||| ||||||||||| || ||||||||||||| Sbjct 837752 CCCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 837693 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| |||||||||| || ||||| ||| | || | ||||| ||||| || Sbjct 837692 CAAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 837633 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| |||| |||||| | | | || ||| |||||| Sbjct 837632 AATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGAC 837573 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || || |||||||| |||||||| Sbjct 837572 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| || ||| ||||| Sbjct 837508 AGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCC 837449 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || ||||| ||| | || | ||||| ||||| || | ||| || ||||| Sbjct 837448 TCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 837389 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| |||||| | | | || ||| ||||| || || ||||||||| Sbjct 837388 TGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCT-CGACCTCAAGGTGATGGTC 837330 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| |||||||| Sbjct 837329 TTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298 >seq22266 Length=384576 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || ||||||||||| | || ||| | | ||| Sbjct 109172 AGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 109231 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || || ||||| || || || | |||||| ||||| Sbjct 109232 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 109291 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| |||||| |||| |||||||| Sbjct 109292 TGGATCTTGGC--CTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGG 109349 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || ||||| || ||||| ||||| Sbjct 109350 TCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 109383 >seq5502 Length=68615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 184/271 (68%), Gaps = 16/271 (6%) Strand=Plus/Plus Query 16672 TTTATTTTAAAATGTATTATTGTTTAGCC-GCATTTACCCTCCTCGTAGCCTCAGTACCA 16730 ||||||| ||||||||| || |||| | ||| ||||| || || | || |||| Sbjct 5785 TTTATTTGGAAATGTATTCAGTTTAAGCCTGGATT---CCTCCGCGGAGACGGAGCACCA 5841 Query 16731 TATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC----TCC 16786 |||| ||||||||||| || ||||| || |||| || || |||||| ||| Sbjct 5842 AGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAGAGT----GCGTCCATCTTCC 5897 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GG 16844 || || ||||| || | || | ||||| || || || | ||||| ||||| || Sbjct 5898 AACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 5957 Query 16845 CAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTT 16904 || || |||||| | | | || || ||| || ||||| ||||||||||| Sbjct 5958 ATCTTGGC--CTTCACGTTCTCAATGGTATCAGAGGGTTCGACTTCCAAGGTGATGGTTT 6015 Query 16905 TTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||||| || || || || || ||||| Sbjct 6016 TTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404975342368810