Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq19246 150 1e-31
seq7229 140 2e-28
seq6738 136 3e-27
seq5502 127 1e-24
seq7156 120 2e-22
seq2594 98.7 7e-16
seq20501 93.3 3e-14
seq22266 91.5 1e-13
seq22190 86.0 4e-12
>seq19246
Length=256796
Score = 150 bits (166), Expect = 1e-31
Identities = 163/214 (76%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
|||| ||| | ||||| || || | |||| ||||| || || ||||| || |||||
Sbjct 132220 ATGGCCACCGTAAACGTTAACCGCAGTGTGACGGACATCTTTTATCGCTATAAGATGCCA 132279
Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279
|| ||||| || ||||| || || ||||||||||| || || |||||| |||| ||||
Sbjct 132280 CG--TCTGCAGGCAAAGGTAGAAGGAAAGGGAAACGGCATCAAGACCGTCCTTGTGAACA 132337
Query 6280 TGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339
|| ||||||| ||| ||| | ||||| || || ||||| ||||| |||||||| || |
Sbjct 132338 TGGCTGAAGTGGCTCGGGCCATAGGACGACCGGCTACCTATCCGACTAAATATTTTGGAT 132397
Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
| || || ||||| ||||| | ||||||||| ||
Sbjct 132398 GTGAGCTGGGCGCCCAGACTCTGTTTGATCATAA 132431
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|||||||| || | || || |||||||| | ||||||||| || || | ||
Sbjct 132512 AACGAGCGTTTTGTTGTGAATGGATCGCACGATGTAAACAAGCTGCAAGATTTGTTGGAT 132571
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494
||||| ||||||||||||||| |||| | |||||||| || ||||| ||| | || | |
Sbjct 132572 GGCTTCATTCGCAAGTTTGTGTTGTGCCCTGAATGCGACAATCCGGAAACCAACCTGACT 132631
Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554
|| ||| |||| | | || || || ||| ||||| || || || | ||||||
Sbjct 132632 GTATCTGCCAAAAATCAGACTATTTCGCAGTCATGCAAGGCCTGTGGCTTCCATGGTCTC 132691
Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602
||| | | |||||| | ||||| ||||| |||| |||||||||
Sbjct 132692 CTGAAGGTCAACCACAAAGTAAACACGTTCATTGTGAAAAATCCTCCA 132739
>seq7229
Length=1535
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1152 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1093
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1092 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1058
>seq6738
Length=1121
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 373 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 314
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 313 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 279
>seq5502
Length=68615
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | |||||| ||||| ||||| || ||||||||| || ||||||||||||
Sbjct 6732 CCACCACGAAGACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGAC 6791
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| |||| |||| || | ||| || |||||||| |||| || || ||||| | |||
Sbjct 6792 AACGTACGTCCGTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGA 6851
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || || |||||| || || ||||||||||| || || || || ||
Sbjct 6852 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCGACC 6911
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | ||||| ||||| || |||| ||| |||||||| || ||||||
Sbjct 6912 TCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATG 6959
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | ||||| ||||| ||| ||||| || || ||||| || ||
Sbjct 6048 CCACCGCGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 6107
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| | || || | || || |||||||| || || || || ||||| | |||
Sbjct 6108 AGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6167
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || || |||||| || || ||||||||||| || || || || ||
Sbjct 6168 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCCACC 6227
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | ||||| ||||| || |||| ||| |||||||| || ||||||
Sbjct 6228 TCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATG 6275
>seq7156
Length=1025
Score = 120 bits (132), Expect = 2e-22
Identities = 78/86 (91%), Gaps = 5/86 (6%)
Strand=Plus/Minus
Query 25911 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTAATCCTTT 25965
||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 1025 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATT 966
Query 25966 CATGCGCGTCACTAATTAGATGACGA 25991
||||||||||||||||||||||||||
Sbjct 965 CATGCGCGTCACTAATTAGATGACGA 940
>seq2594
Length=44072
Score = 98.7 bits (108), Expect = 7e-16
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 34214 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 34155
Query 20007 GGTAATATTTAG 20018
||| ||||||||
Sbjct 34154 GGTTATATTTAG 34143
>seq20501
Length=31302
Score = 93.3 bits (102), Expect = 3e-14
Identities = 163/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | || ||||| |||||| || | |||| |||||| ||||| || || |||||
Sbjct 11116 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 11175
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| ||| | || || | || || || || || || || || || ||||| | ||
Sbjct 11176 GAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 11235
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAA 38268
| |||||||||||| ||| || || ||||| | || ||| || | || ||| |
Sbjct 11236 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTC-CGACGGTTCGA 11294
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323
| || | || || || || ||||| | ||| || ||||| |||||||| || ||
Sbjct 11295 CCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTA 11349
>seq22266
Length=384576
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || || | ||||| |||||| || |||||| || || ||||| || |
Sbjct 109155 TACCACCACGCAGGCGGAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 109214
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| || | || || | || || ||||| || || || || || ||||| | ||
Sbjct 109215 ACAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 109274
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||| || |||||| || || ||||||||||| || || || | || |
Sbjct 109275 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCA 109334
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
| || || || || || || || || | |||||||||||| || ||||||
Sbjct 109335 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATG 109384
>seq22190
Length=927835
Score = 86.0 bits (94), Expect = 4e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || || | |||||| || || || |||||| || || ||||| || |||
Sbjct 837296 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 837237
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| ||| | || || | ||||||||||| || || | || || || || | |||
Sbjct 837236 AAGGTGCGTCCATCTTCCAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGA 837177
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || || |||||| || || |||||| |||| | ||||| | |||||
Sbjct 837176 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACC 837117
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || || || || || || ||||| || ||||| || || ||||||||
Sbjct 837116 TCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAAATTTGCATGTT 837067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334854048985589
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |