Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq22430 154 1e-32 seq5502 125 6e-24 seq22190 116 3e-21 seq20501 86.0 5e-12 >seq22430 Length=315411 Score = 154 bits (170), Expect = 1e-32 Identities = 213/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 50988 AAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTC 51047 ||| || ||| |||||| |||||||| |||| | | || ||||| |||||| Sbjct 157240 AAATTTGCGCCGGCAGCCCTGATAGTTCATGTACCGAACCTTTCCGAAAATGGCGCGTTC 157181 Query 51048 TTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGG 51107 || | | | || || ||||||| || ||||||||||| |||||||| ||| || Sbjct 157180 CTTCCATCCCATATCATGGACACCGCCGATGGACCACATACAGCCCACATAGCCGTTGGG 157121 Query 51108 ATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTC 51167 |||||| ||||| | ||| || | ||||| || | || ||||| |||| ||| || Sbjct 157120 ATCGCGTCCATCGAGGCTATACTTGTCGTTCAGTAGGATCGCATACTCCAACGCCTGTTC 157061 Query 51168 TGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCAT 51227 | | | |||||||| | ||| || |||||||| |||||||| | | | |||||||| Sbjct 157060 CGGGGTGGCGGTCCATTCGAGAATCTTTTTGGCCCAATACATGCGTAAGAAGCCGTGCAT 157001 Query 51228 CTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTTGG 51285 ||| ||||||| |||||| ||| ||||||||||||| ||||||| ||| || Sbjct 157000 CTTACCCTCGCGCACCAGCTGCAATTGTGCCGAGTTCCACAGGTCGTCGTACGTTAGG 156943 >seq5502 Length=68615 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||| |||||||| ||| ||||||| ||||||||||| | ||| Sbjct 6730 ATGCAAATCTTCGTAAAGACCTTGACCGGAAAAACCATCACTCTCGAAGTGGAGCCATCT 6671 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || |||| || || | ||| || || || || ||||| || || || Sbjct 6670 GACACCATTGAAAATGTGAAGGCTAAGATTCA-GGATAAGGAGGGAATTCCCCCAGATCA 6612 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| || || || || || ||||||| ||||| | ||| ||||| Sbjct 6611 GCAGCGTCTCATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCCGACTACAA 6552 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || || || || || Sbjct 6551 CATCCAGAAGGAATCCACCCTTCACTTGGTTCT 6519 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || ||| |||| || | || |||||| | || Sbjct 6274 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATTACCCTTGAGGTGGAGCCATCC 6215 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||| || || ||||| || || || Sbjct 6214 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 6155 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| || || | ||| ||||| Sbjct 6154 CAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCCGACTACAAC 6095 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || || || || || Sbjct 6094 ATCCAGAAGGAATCCACCCTTCACTTGGTTCT 6063 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||| || || |||| || | || |||||| | || Sbjct 7415 AATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATTACTTTGGAGGTGGAGCCTTC 7356 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || |||||| | ||| | || | ||| || || || || ||||| || |||| Sbjct 7355 CGATACGATCGAGAATGTAAAGGCCAAGATTCAG-GATAAGGAGGGCATTCCCCCAGACC 7297 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||||||||| || | ||||||| || || | ||| |||| Sbjct 7296 AGCAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCCGACTACA 7237 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || |||||||| || || || || || Sbjct 7236 ACATCCAGAAGGAATCCACCCTTCACTTGGTCCT 7203 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || ||| |||| || | || || ||| | || Sbjct 6958 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATTACCCTTGAGGTCGAGCCATCC 6899 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||| || || ||||| || || || Sbjct 6898 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 6839 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| ||| | || || | || || || |||||||| Sbjct 6838 CAGCGATTAATCTTTGCCGGCAAGCAACTGGAGGACGGACGTACGTTGTCTGATTACAAC 6779 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || ||||| || || || || || || || Sbjct 6778 ATCCAAAAGGAGTCGACCCTTCACTTGGT 6750 >seq22190 Length=927835 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||||||||||| || ||||||| | || || ||| | || Sbjct 837070 ATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 837129 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| ||||| || ||| ||||| || || ||||| || ||||| Sbjct 837130 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 837189 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| ||||| | ||||||| ||||| || ||| ||||| Sbjct 837190 CAGCGATTGATCTTCGCCGGAAAACAGCTGGAAGATGGACGCACCTTGTCCGACTACAAC 837249 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || ||||| Sbjct 837250 ATCCAGAAGGAGTCTACCCTCCACTTGGTGCT 837281 >seq20501 Length=31302 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || || |||| Sbjct 11343 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 11284 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 11283 GACACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 11228 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || ||||| || | ||||||| || || | || || Sbjct 11227 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTA 11168 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| | || || ||||| Sbjct 11167 TAACATTCAGAAGGAGTCCACTTTGCACTTGGTGCT 11132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433207488639485