Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq22430 154 1e-32
seq5502 125 6e-24
seq22190 116 3e-21
seq20501 86.0 5e-12
>seq22430
Length=315411
Score = 154 bits (170), Expect = 1e-32
Identities = 213/298 (71%), Gaps = 0/298 (0%)
Strand=Plus/Minus
Query 50988 AAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTC 51047
||| || ||| |||||| |||||||| |||| | | || ||||| ||||||
Sbjct 157240 AAATTTGCGCCGGCAGCCCTGATAGTTCATGTACCGAACCTTTCCGAAAATGGCGCGTTC 157181
Query 51048 TTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGG 51107
|| | | | || || ||||||| || ||||||||||| |||||||| ||| ||
Sbjct 157180 CTTCCATCCCATATCATGGACACCGCCGATGGACCACATACAGCCCACATAGCCGTTGGG 157121
Query 51108 ATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTC 51167
|||||| ||||| | ||| || | ||||| || | || ||||| |||| ||| ||
Sbjct 157120 ATCGCGTCCATCGAGGCTATACTTGTCGTTCAGTAGGATCGCATACTCCAACGCCTGTTC 157061
Query 51168 TGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCAT 51227
| | | |||||||| | ||| || |||||||| |||||||| | | | ||||||||
Sbjct 157060 CGGGGTGGCGGTCCATTCGAGAATCTTTTTGGCCCAATACATGCGTAAGAAGCCGTGCAT 157001
Query 51228 CTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTTGG 51285
||| ||||||| |||||| ||| ||||||||||||| ||||||| ||| ||
Sbjct 157000 CTTACCCTCGCGCACCAGCTGCAATTGTGCCGAGTTCCACAGGTCGTCGTACGTTAGG 156943
>seq5502
Length=68615
Score = 125 bits (138), Expect = 6e-24
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || |||||||| |||||||| ||| ||||||| ||||||||||| | |||
Sbjct 6730 ATGCAAATCTTCGTAAAGACCTTGACCGGAAAAACCATCACTCTCGAAGTGGAGCCATCT 6671
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || |||| || || | ||| || || || || ||||| || || ||
Sbjct 6670 GACACCATTGAAAATGTGAAGGCTAAGATTCA-GGATAAGGAGGGAATTCCCCCAGATCA 6612
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | ||||| || || || || || ||||||| ||||| | ||| |||||
Sbjct 6611 GCAGCGTCTCATTTTCGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCCGACTACAA 6552
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || |||||||| || || || || ||
Sbjct 6551 CATCCAGAAGGAATCCACCCTTCACTTGGTTCT 6519
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| |||| || ||| |||| || | || |||||| | ||
Sbjct 6274 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATTACCCTTGAGGTGGAGCCATCC 6215
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| ||||| || ||| ||||| || || ||||| || || ||
Sbjct 6214 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 6155
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||||||||| || | ||||||| || || | ||| |||||
Sbjct 6154 CAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCCGACTACAAC 6095
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || |||||||| || || || || ||
Sbjct 6094 ATCCAGAAGGAATCCACCCTTCACTTGGTTCT 6063
Score = 100 bits (110), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||| ||||| || || |||| || | || |||||| | ||
Sbjct 7415 AATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATTACTTTGGAGGTGGAGCCTTC 7356
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || |||||| | ||| | || | ||| || || || || ||||| || ||||
Sbjct 7355 CGATACGATCGAGAATGTAAAGGCCAAGATTCAG-GATAAGGAGGGCATTCCCCCAGACC 7297
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | || ||||||||||| || | ||||||| || || | ||| ||||
Sbjct 7296 AGCAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCCGACTACA 7237
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || || |||||||| || || || || ||
Sbjct 7236 ACATCCAGAAGGAATCCACCCTTCACTTGGTCCT 7203
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| |||| || ||| |||| || | || || ||| | ||
Sbjct 6958 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATTACCCTTGAGGTCGAGCCATCC 6899
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| ||||| || ||| ||||| || || ||||| || || ||
Sbjct 6898 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 6839
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||||||||| ||| | || || | || || || ||||||||
Sbjct 6838 CAGCGATTAATCTTTGCCGGCAAGCAACTGGAGGACGGACGTACGTTGTCTGATTACAAC 6779
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207
|| ||||| || || || || || || ||
Sbjct 6778 ATCCAAAAGGAGTCGACCCTTCACTTGGT 6750
>seq22190
Length=927835
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| |||||||||||||| || ||||||| | || || ||| | ||
Sbjct 837070 ATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 837129
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || || ||| ||||| || ||| ||||| || || ||||| || |||||
Sbjct 837130 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 837189
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || ||||| ||||| | ||||||| ||||| || ||| |||||
Sbjct 837190 CAGCGATTGATCTTCGCCGGAAAACAGCTGGAAGATGGACGCACCTTGTCCGACTACAAC 837249
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || |||||
Sbjct 837250 ATCCAGAAGGAGTCTACCCTCCACTTGGTGCT 837281
>seq20501
Length=31302
Score = 86.0 bits (94), Expect = 5e-12
Identities = 150/216 (69%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || ||||||| | || || || ||||
Sbjct 11343 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 11284
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||||||||| |||| |||| || | ||| ||||||||||| ||||| || ||
Sbjct 11283 GACACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 11228
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||||| | || || || ||||| || | ||||||| || || | || ||
Sbjct 11227 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTA 11168
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || || ||||| | || || |||||
Sbjct 11167 TAACATTCAGAAGGAGTCCACTTTGCACTTGGTGCT 11132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433207488639485
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |