Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_008348.1
Length=168041
Score E
Sequences producing significant alignments: (Bits) Value
seq22228 107 2e-18
>seq22228
Length=358660
Score = 107 bits (118), Expect = 2e-18
Identities = 231/345 (67%), Gaps = 3/345 (1%)
Strand=Plus/Plus
Query 127525 CGGTCTGCCGCGAGGTTTGCACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGG 127584
||||||| | ||| ||||||| || ||||||||||||||||| |||| | |||||
Sbjct 288001 CGGTCTGGCCAAGGGTCTGCACGGATTCCACGTGCACGAGTTCGGTGACAACACCAACGG 288060
Query 127585 TTGCACGTCGGCGGGGGAACACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGC 127644
|||| ||| | ||| ||||||||||| ||| | ||| ||||| || ||| ||
Sbjct 288061 CTGCATGTCATCCGGGCCGCACTTCAATCCTTACGGCAAGGAGCACGGCGCCCCCGCCGA 288120
Query 127645 GCTCGTTCGTCACGTTGGCGACCTGGGCAACGTGGAGGCGGCTAGCAGCAATTCTTTGAC 127704
| || ||| | ||||| ||||||||| | || ||| | | || | | ||
Sbjct 288121 CGAGGACCGCCACCTGGGCGATCTGGGCAACATTGA---GGCCACCGGCGACTGCCCCAC 288177
Query 127705 CGAAGTCAACATCATCGACCACGTCATGTCTCTGTACGGACCGAACAGCGTCATCGGTAG 127764
| |||| ||||| |||| || | || | ||| | ||||| ||||||| |
Sbjct 288178 GAAGGTCACCATCACCGACTCGAGGATCACGCTCTTCGGCGCCGACAGCATCATCGGACG 288237
Query 127765 GAGTCTGGTCGTGCACACGGATCGTGACGATCTCGGCCTGACCGATCATTATTTGAGCAA 127824
| |||| || ||| | ||| || ||||||||| | || || | |||||||
Sbjct 288238 CACCGTGGTGGTCCACGCCGATGCCGATGATCTCGGCAAGGGCGGCCACGAGCTGAGCAA 288297
Query 127825 AACCACCGGCAACTCGGGCGGTCGGTTGGGGTGCGGGATCATTGG 127869
|||| |||||| | |||| ||| | || ||||| |||||||
Sbjct 288298 GTCCACGGGCAACGCTGGCGCTCGCATTGGATGCGGCGTCATTGG 288342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 537449855407240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |