Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq22228 107 2e-18 >seq22228 Length=358660 Score = 107 bits (118), Expect = 2e-18 Identities = 231/345 (67%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 127525 CGGTCTGCCGCGAGGTTTGCACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGG 127584 ||||||| | ||| ||||||| || ||||||||||||||||| |||| | ||||| Sbjct 288001 CGGTCTGGCCAAGGGTCTGCACGGATTCCACGTGCACGAGTTCGGTGACAACACCAACGG 288060 Query 127585 TTGCACGTCGGCGGGGGAACACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGC 127644 |||| ||| | ||| ||||||||||| ||| | ||| ||||| || ||| || Sbjct 288061 CTGCATGTCATCCGGGCCGCACTTCAATCCTTACGGCAAGGAGCACGGCGCCCCCGCCGA 288120 Query 127645 GCTCGTTCGTCACGTTGGCGACCTGGGCAACGTGGAGGCGGCTAGCAGCAATTCTTTGAC 127704 | || ||| | ||||| ||||||||| | || ||| | | || | | || Sbjct 288121 CGAGGACCGCCACCTGGGCGATCTGGGCAACATTGA---GGCCACCGGCGACTGCCCCAC 288177 Query 127705 CGAAGTCAACATCATCGACCACGTCATGTCTCTGTACGGACCGAACAGCGTCATCGGTAG 127764 | |||| ||||| |||| || | || | ||| | ||||| ||||||| | Sbjct 288178 GAAGGTCACCATCACCGACTCGAGGATCACGCTCTTCGGCGCCGACAGCATCATCGGACG 288237 Query 127765 GAGTCTGGTCGTGCACACGGATCGTGACGATCTCGGCCTGACCGATCATTATTTGAGCAA 127824 | |||| || ||| | ||| || ||||||||| | || || | ||||||| Sbjct 288238 CACCGTGGTGGTCCACGCCGATGCCGATGATCTCGGCAAGGGCGGCCACGAGCTGAGCAA 288297 Query 127825 AACCACCGGCAACTCGGGCGGTCGGTTGGGGTGCGGGATCATTGG 127869 |||| |||||| | |||| ||| | || ||||| ||||||| Sbjct 288298 GTCCACGGGCAACGCTGGCGCTCGCATTGGATGCGGCGTCATTGG 288342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537449855407240