Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq22136 232 7e-56 seq21681 123 3e-23 seq19982 113 5e-20 seq20483 105 7e-18 >seq22136 Length=515022 Score = 232 bits (256), Expect = 7e-56 Identities = 549/824 (67%), Gaps = 8/824 (1%) Strand=Plus/Plus Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 ||||| || || || || || || ||||| || ||||| || |||| || ||| | | Sbjct 289634 TGGTACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGGGAGATCATCTCC 289693 Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAATAAT 92923 | | ||| || ||||||| ||| || |||| || || ||| || || || Sbjct 289694 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAATTCCACCAGCAAA 289753 Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 | || || || || || |||||||| ||||| | || || ||||| || | ||| | Sbjct 289754 CGGTCCGCCACGAACTCAATGTACTGCGACATGAGGTCGCAGTTCATGCCAATAAGGTTT 289813 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || || || || ||||| | ||| || | ||| || | || || || | ||| || Sbjct 289814 ACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCACGGATGATCTCG 289873 Query 93044 ATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG-CAAAG 93100 || | | || ||| || || || | || | | |||| | ||||| | ||| Sbjct 289874 ATGATGCGCTCGCGCCTGG--GTCGCTGAACCAGATGCTGGAACATCA-GCACGGCGAAG 289930 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 || || || || ||||| || || |||| || ||| ||| || | || || | | Sbjct 289931 TCACAGTGCAATCCCTCGTCCCGGGAGATCAGTTCGTTGGAGAAGGTCAGGCCCGGCATC 289990 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 | || |||||||| ||||| || || || || ||||| || || || || || ||| Sbjct 289991 AAACCGCGTTTCTTTAGCCAGAAAATGGAGGCGAAACTGCCGCTGAAGAAGATGCCCTCC 290050 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 ||||| ||||| || | || || || | ||||| ||||| || | |||||| Sbjct 290051 ACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCGGACTTGGAGGAGATCCAGGAC 290110 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 | ||||| || || || ||| | || | || ||||| ||||| || || || Sbjct 290111 AGGGCCCAGTCCGCCTTGCGCTTCACCGCTGGCATCGTCTCGATGGCGTTGAACAGATAG 290170 Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400 ||||||| || || ||| || ||||| || ||||| | || ||||| || || || Sbjct 290171 TCTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACGCTGTACATCTCCGAGTGC 290230 Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460 || |||||||| || || |||||||||||||| || | || |||||||||||||| || Sbjct 290231 ACGTTCTCCATGGCGATCTGGAATCCGTAGAAGCAGCGGGCCTCCGTGATCTGCACCTCC 290290 Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCC 93520 ||| || | ||| ||||| || ||||| || || |||||||| || || || || ||| Sbjct 290291 TGACTGAAGCGCTCCACGAGGTTCTCATTAACAATGCCATCGGAGGCGGCGAAGAAGGCC 290350 Query 93521 AATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCT 93580 | | ||| || || || |||||| || || || || ||| |||| | || Sbjct 290351 AGCACGTGCGAGATGAAGTGACGCTCATCGTCCTTGAGACGATGCCAGTCGGTCAAGTCC 290410 Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || || || || || || |||||||| || || || || || Sbjct 290411 TTGGACAGGTCAACCTCCTCCACAGTCCAGAAAGAGGCCTCAGC 290454 >seq21681 Length=371759 Score = 123 bits (136), Expect = 3e-23 Identities = 94/109 (86%), Gaps = 4/109 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 169966 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 170025 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTA--TTATTGGAATTTTTGTT 126369 |||||||||||||||||||||||||||| | || || ||||||||| Sbjct 170026 GTGGGTTCGAACCCCACACCTGACAAATAAGTTTGTTATTATTTTTGTT 170074 Score = 111 bits (122), Expect = 2e-19 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||| ||||||||||||| |||||||||||||||||||||| |||||||| | | ||| Sbjct 14439 CAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGAG 14498 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||| |||| Sbjct 14499 CGTGGGTTCGAACCCCACACCTGGCAAA 14526 >seq19982 Length=13801 Score = 113 bits (124), Expect = 5e-20 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||| ||||||||||||| |||||||||||||||||||||| |||||||| | | || Sbjct 1725 ACAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGA 1784 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||| |||| Sbjct 1785 GCGTGGGTTCGAACCCCACACCTGGCAAA 1813 >seq20483 Length=183993 Score = 105 bits (116), Expect = 7e-18 Identities = 73/82 (89%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTG 126325 ||||||||||||| |||||||||||||||||||||| |||||||| | | ||||||| Sbjct 104859 CAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGAGCGTG 104800 Query 126326 GGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||| || Sbjct 104799 GGTTCGAACCCCACACCTGGCA 104778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556701962417560