Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq20124 109 1e-18
seq22312 95.1 2e-14
seq19276 95.1 2e-14
seq22310 89.7 1e-12
seq21400 89.7 1e-12
seq20293 89.7 1e-12
seq12109 89.7 1e-12
seq11657 89.7 1e-12
seq3368 89.7 1e-12
seq22136 86.0 1e-11
>seq20124
Length=133112
Score = 109 bits (120), Expect = 1e-18
Identities = 322/494 (65%), Gaps = 12/494 (2%)
Strand=Plus/Minus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTAT 218573
||||||||| || |||||| | || ||||| |||| | ||||| |||||
Sbjct 44144 GACTTCATCAACCTGGAGCTGGTGCTGTTCTCCAATGCGG----ACAACGAGCGCTCTAT 44089
Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633
|||||| |||||||||| || ||||| ||||| ||| | | || || |||||
Sbjct 44088 TCCCAGTCTGGTGGATGGACTTAAGCCGGGTCAGCGCAAGGTAATGTTCACCTGCTTCAA 44029
Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693
| ||||| | || | |||||||| ||| | || || | || |||| || ||
Sbjct 44028 GAGGAACGACAAGCGCGAGGTGAAGGTCGCCCAGCTATCCGGATCGGTGGCCGAGATGTC 43969
Query 218694 TGGCTACCATCACGGTGAGCAGAGTC--TGCAGGGTGCCATTGTAGGCATGGCACAGGAC 218751
| |||||| ||||| ||| | || ||||| ||||||| | || ||| ||
Sbjct 43968 CGCCTACCACCACGGCGAG--GTCTCGTTGCAGATGACCATTGTGAATCTCGCCCAGAAC 43911
Query 218752 TATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTA 218811
| ||||||| |||||||| || ||||| || ||||||||| ||| ||||| |
Sbjct 43910 TTTGTGGGCGCAAACAACATCAATCTGCTGGAACCACGCGGTCAGTTCGGTACTCGTTTG 43851
Query 218812 TTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACG 218871
|||||| || ||||| || || | || || || || | |||| ||| |||||
Sbjct 43850 ACGGGTGGCAAAGATAGCGCCAGCGCTCGTTACATTTTCACTTTGATGTCTCCCTTGACG 43791
Query 218872 CGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCT 218931
|| | | || ||| || ||| ||| || | || | | |||||||||
Sbjct 43790 CGACTCATCTTTCATCCCTTGGACGATCCGCTTCTGGATTACCAGGTGGACGATGGCCAA 43731
Query 218932 TCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAAT 218991
|||||| ||| |||||| |||| || ||| | |||| || || || ||| |
Sbjct 43730 AAGATTGAACCCCTATGGTATTTGCCCATCATACCGATGGTGCTGGTCAACGGAGCCGAG 43671
Query 218992 GGTATCGGGACAGG 219005
|| ||||| || ||
Sbjct 43670 GGCATCGGCACTGG 43657
>seq22312
Length=404719
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 368996 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 369055
Query 142561 AGCCCCACATCGGGC 142575
|||||||| | ||||
Sbjct 369056 AGCCCCACGTTGGGC 369070
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 362024 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 361965
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 361964 CCCCACGTTGGGC 361952
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 374811 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 374752
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 374751 CCCCACGTTGGGC 374739
Score = 91.5 bits (100), Expect = 3e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 376226 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 376167
Query 142561 AGCCCCACATCGGGC 142575
|||||||| | ||||
Sbjct 376166 AGCCCCACGTTGGGC 376152
Score = 91.5 bits (100), Expect = 3e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 377379 ATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 377320
Query 142561 AGCCCCACATCGGGC 142575
|||||||| | ||||
Sbjct 377319 AGCCCCACGTTGGGC 377305
Score = 91.5 bits (100), Expect = 3e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 378105 ATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 378164
Query 142561 AGCCCCACATCGGGC 142575
|||||||| | ||||
Sbjct 378165 AGCCCCACGTTGGGC 378179
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 400290 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 400349
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 400350 CCCACGTTGGGC 400361
>seq19276
Length=220101
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 167042 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 167101
Query 142561 AGCCCCACATCGGGC 142575
|||||||| | ||||
Sbjct 167102 AGCCCCACGTTGGGC 167116
>seq22310
Length=248627
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 59813 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 59872
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 59873 CCCACGTTGGGC 59884
>seq21400
Length=313094
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 243981 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 243922
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 243921 CCCACGTTGGGC 243910
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 244709 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 244650
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 244649 CCCACGTTGGGC 244638
>seq20293
Length=121772
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 82058 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 81999
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 81998 CCCACGTTGGGC 81987
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 82779 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 82838
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 82839 CCCACGTTGGGC 82850
>seq12109
Length=1007
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 869 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 928
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 929 CCCACGTTGGGC 940
>seq11657
Length=9227
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||| || ||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 7584 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 7643
Query 142112 CCCCGCCAGAGA 142123
|||||| || ||
Sbjct 7644 CCCCGCAAGGGA 7655
>seq3368
Length=1176
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 911 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 852
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 851 CCCACGTTGGGC 840
>seq22136
Length=515022
Score = 86.0 bits (94), Expect = 1e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| ||||| ||||| | ||||||||||| ||| ||||| ||
Sbjct 289655 TCGAAGAAGTTGGTCTTGCCGTCCAGGGAGATCATCTCCATGAAGTTGAACGGGTTCTTG 289714
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| ||||| ||| | ||| | | | || | | ||||| ||||| ||||| |
Sbjct 289715 GTGTTGTAGATCTTTCCAACGCCCAATTCCACCAGCAAACGGTCCGCCACGAACTCAATG 289774
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714
||||| ||| || || |||||||||||||
Sbjct 289775 TACTGCGACATGAGGTCGCAGTTCATGCCAAT 289806
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027536292960779
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |