Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq20124 109 1e-18 seq22312 95.1 2e-14 seq19276 95.1 2e-14 seq22310 89.7 1e-12 seq21400 89.7 1e-12 seq20293 89.7 1e-12 seq12109 89.7 1e-12 seq11657 89.7 1e-12 seq3368 89.7 1e-12 seq22136 86.0 1e-11 >seq20124 Length=133112 Score = 109 bits (120), Expect = 1e-18 Identities = 322/494 (65%), Gaps = 12/494 (2%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTAT 218573 ||||||||| || |||||| | || ||||| |||| | ||||| ||||| Sbjct 44144 GACTTCATCAACCTGGAGCTGGTGCTGTTCTCCAATGCGG----ACAACGAGCGCTCTAT 44089 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 |||||| |||||||||| || ||||| ||||| ||| | | || || ||||| Sbjct 44088 TCCCAGTCTGGTGGATGGACTTAAGCCGGGTCAGCGCAAGGTAATGTTCACCTGCTTCAA 44029 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 | ||||| | || | |||||||| ||| | || || | || |||| || || Sbjct 44028 GAGGAACGACAAGCGCGAGGTGAAGGTCGCCCAGCTATCCGGATCGGTGGCCGAGATGTC 43969 Query 218694 TGGCTACCATCACGGTGAGCAGAGTC--TGCAGGGTGCCATTGTAGGCATGGCACAGGAC 218751 | |||||| ||||| ||| | || ||||| ||||||| | || ||| || Sbjct 43968 CGCCTACCACCACGGCGAG--GTCTCGTTGCAGATGACCATTGTGAATCTCGCCCAGAAC 43911 Query 218752 TATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTA 218811 | ||||||| |||||||| || ||||| || ||||||||| ||| ||||| | Sbjct 43910 TTTGTGGGCGCAAACAACATCAATCTGCTGGAACCACGCGGTCAGTTCGGTACTCGTTTG 43851 Query 218812 TTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACG 218871 |||||| || ||||| || || | || || || || | |||| ||| ||||| Sbjct 43850 ACGGGTGGCAAAGATAGCGCCAGCGCTCGTTACATTTTCACTTTGATGTCTCCCTTGACG 43791 Query 218872 CGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCT 218931 || | | || ||| || ||| ||| || | || | | ||||||||| Sbjct 43790 CGACTCATCTTTCATCCCTTGGACGATCCGCTTCTGGATTACCAGGTGGACGATGGCCAA 43731 Query 218932 TCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAAT 218991 |||||| ||| |||||| |||| || ||| | |||| || || || ||| | Sbjct 43730 AAGATTGAACCCCTATGGTATTTGCCCATCATACCGATGGTGCTGGTCAACGGAGCCGAG 43671 Query 218992 GGTATCGGGACAGG 219005 || ||||| || || Sbjct 43670 GGCATCGGCACTGG 43657 >seq22312 Length=404719 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 368996 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 369055 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 369056 AGCCCCACGTTGGGC 369070 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 362024 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 361965 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 361964 CCCCACGTTGGGC 361952 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 374811 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 374752 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 374751 CCCCACGTTGGGC 374739 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 376226 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 376167 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 376166 AGCCCCACGTTGGGC 376152 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 377379 ATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 377320 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 377319 AGCCCCACGTTGGGC 377305 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 378105 ATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 378164 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 378165 AGCCCCACGTTGGGC 378179 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 400290 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 400349 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 400350 CCCACGTTGGGC 400361 >seq19276 Length=220101 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 167042 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 167101 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 167102 AGCCCCACGTTGGGC 167116 >seq22310 Length=248627 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 59813 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 59872 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 59873 CCCACGTTGGGC 59884 >seq21400 Length=313094 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 243981 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 243922 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 243921 CCCACGTTGGGC 243910 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 244709 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 244650 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 244649 CCCACGTTGGGC 244638 >seq20293 Length=121772 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 82058 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 81999 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 81998 CCCACGTTGGGC 81987 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 82779 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 82838 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 82839 CCCACGTTGGGC 82850 >seq12109 Length=1007 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 869 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 928 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 929 CCCACGTTGGGC 940 >seq11657 Length=9227 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 7584 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 7643 Query 142112 CCCCGCCAGAGA 142123 |||||| || || Sbjct 7644 CCCCGCAAGGGA 7655 >seq3368 Length=1176 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 911 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 852 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 851 CCCACGTTGGGC 840 >seq22136 Length=515022 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| ||||| ||||| | ||||||||||| ||| ||||| || Sbjct 289655 TCGAAGAAGTTGGTCTTGCCGTCCAGGGAGATCATCTCCATGAAGTTGAACGGGTTCTTG 289714 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | ||| | | | || | | ||||| ||||| ||||| | Sbjct 289715 GTGTTGTAGATCTTTCCAACGCCCAATTCCACCAGCAAACGGTCCGCCACGAACTCAATG 289774 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 ||||| ||| || || ||||||||||||| Sbjct 289775 TACTGCGACATGAGGTCGCAGTTCATGCCAAT 289806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027536292960779