Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq5502 197 3e-45
seq20501 167 4e-36
seq22266 158 2e-33
seq22190 149 1e-30
seq19268 96.9 6e-15
>seq5502
Length=68615
Score = 197 bits (218), Expect = 3e-45
Identities = 181/229 (79%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
|||||||||| || || | |||||||| | |||||||| || ||||||||||||||||
Sbjct 5818 TTCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGG 5877
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
| || || | |||||||| |||||||| |||||||| || | | || || || || |
Sbjct 5878 ACAGAGTGCGTCCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 5937
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
|||| || |||||||| || ||||| ||||| ||| ||| ||||| || | | ||| |
Sbjct 5938 GAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGA 5997
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||||||||||||||||||| || | |||||| ||||| || |||||
Sbjct 5998 CTTCCAAGGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6046
Score = 179 bits (198), Expect = 7e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| |||||||| || | |||||||| || ||||| || || |||||||| || || ||
Sbjct 6960 CCACCGCGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAA 7019
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| |||||||| || ||||| ||||| | || || || || |||
Sbjct 7020 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 7079
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| || |||||||| ||||| || || |||||||| | || ||| |||
Sbjct 7080 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCGACT 7139
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||||||||||| ||||| || | |||||| ||||| || |||||
Sbjct 7140 TCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 7186
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | |||||||| || ||||| || || |||||||| || |||||
Sbjct 6504 CCACCGCGGAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 6563
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| |||||||| || ||||| ||||| | || || || || |||
Sbjct 6564 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 6623
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| || |||||||| ||||| || || |||||||| | || || |||
Sbjct 6624 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCACT 6683
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||||||||| || | |||||| ||||| || |||||
Sbjct 6684 TCGAGAGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| |||||||||||||| || || ||||| ||||||||||| ||||| ||
Sbjct 6732 CCACCACGAAGACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGAC 6791
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | || || || | ||||| ||||| || || | || || || || || |||
Sbjct 6792 AACGTACGTCCGTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGA 6851
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| ||||| || |||||| ||||| | || || ||
Sbjct 6852 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCGACC 6911
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| |||||||| || || |||||||| ||||| || |||||
Sbjct 6912 TCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958
>seq20501
Length=31302
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| |||||||| | |||||||| || || |||||||| || |||
Sbjct 11117 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 11176
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | |||||| || ||||| || || | || || || || |||
Sbjct 11177 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 11236
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| ||||| |||||||| || ||||| ||||| ||||| | | ||| ||
Sbjct 11237 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACC 11296
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || |||||||||||||| ||||| ||||||||
Sbjct 11297 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11343
>seq22266
Length=384576
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||| || || || ||||| || |||||||| || || ||
Sbjct 109157 CCACCACGCAGGCGGAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 109216
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || || | || || || || |||
Sbjct 109217 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 109276
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| ||||| || |||||||||||| | | || ||
Sbjct 109277 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 109336
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||||||||||| || || |||||||| || ||||| || |||||
Sbjct 109337 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 109383
>seq22190
Length=927835
Score = 149 bits (164), Expect = 1e-30
Identities = 170/227 (75%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || ||||| || |||||||| || |||||
Sbjct 837523 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 837464
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | || || || |||||||| || || || || | | || ||||| || |||
Sbjct 837463 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 837404
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| || || || ||||| ||| ||||||||| || | | || ||
Sbjct 837403 ATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACC 837344
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| |||||||||||| || || ||||| |||||||| || ||||||||
Sbjct 837343 T-CAAGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| ||||| || | |||||||| || |||||||| || |||||
Sbjct 837751 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 837692
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | || || || |||||||| || || || || | | || ||||| || |||
Sbjct 837691 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 837632
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| || || || ||||| ||| ||| ||||| || | | || ||
Sbjct 837631 ATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACC 837572
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || ||||| |||||||| || ||||||||
Sbjct 837571 TCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525
>seq19268
Length=154205
Score = 96.9 bits (106), Expect = 6e-15
Identities = 162/233 (70%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 268247 TGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCG 268306
|| ||||| ||||||| || || ||||| || | ||||| ||||| ||||| || | |
Sbjct 40823 TGTAGCATCATCCACATGGCCTCCACATAATCACTGGCATGTCCCCAGTCGCGTTTCGAG 40882
Query 268307 TCCATGTTCCCGAGGAACAGGCATTTC---TGCTTGCCGAGCTTCACGCGTGCAAGACCG 268363
|| | ||| || || | | | | | || ||| || || | || | ||
Sbjct 40883 TCAAGGTTGCCCAGCTCAAAGTACTCCATTTGTTTGAGCAGAATCTTG---GCCACACTA 40939
Query 268364 CGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGG 268423
|| || ||||| | |||||| || |||| |||||| | || |||||||| || |||||
Sbjct 40940 CGGGTTATTTTCCTGGTCACAAAGTTCTCTCCACGTCGTGGACTCTCGTGATTAAAGAGA 40999
Query 268424 ATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCA 268476
||||||||||| ||| ||||| || ||||| | |||||| | ||| ||||
Sbjct 41000 ATGCCGTTGCAGGCGTACATGTTGTAGGCCTCCCTGTAGTTGATGACGATCCA 41052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921359518730680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |