Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq5502 100 2e-16 >seq5502 Length=68615 Score = 100 bits (110), Expect = 2e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 21823 AATAGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAA 21882 |||| | ||||||||| || ||| | || ||||| || ||||| |||||||| |||| Sbjct 7425 AATAATCCAAAATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATTACTTTGGAGG 7366 Query 21883 CGGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTAC 21942 ||| | | || ||| | | || | ||| || ||| ||||| ||||| | | Sbjct 7365 TGGAGCCTTCCGATACGATCGAGAATGTAAAGGCCAAGATTCAGGATAAGGAGGGCATTC 7306 Query 21943 CTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGG 22002 | | |||| ||| | || |||||||| ||||| || || |||||| | ||| | Sbjct 7305 CCCCAGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTT 7246 Query 22003 CCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||| ||||| || ||||||||||| || ||||| |||| | ||| | || || || Sbjct 7245 CCGACTACAACATCCAGAAGGAATCCACCCTTCACTTGGTCCTCCGTCTTCGCGGTGG 7188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358025203142926