Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq21718 98.7 2e-17 >seq21718 Length=495572 Score = 98.7 bits (108), Expect = 2e-17 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 3334 CCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCG 3393 |||||| || ||||| |||| |||| ||||| || |||||||||||||| || Sbjct 425547 CCCATGGCACGGGTCTTCCCAAAGGTCACCAAGTGTACGTTCCACAAATACGGTCCCTCC 425488 Query 3394 GGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAG 3453 ||| || | || | ||| || || ||| | || || |||| | |||||||||||| Sbjct 425487 GGCAATGTGCAGAAGTTCGACGGTCTGTGCGTGCTGCCCCTGAACATTGTCAACGAGAAG 425428 Query 3454 ATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||| ||||||| |||||||||||| Sbjct 425427 ATCTACGTTTTCCTGTGGTTCTGGTTC 425401 Score = 77.0 bits (84), Expect = 8e-11 Identities = 86/115 (75%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || ||||| || ||| | || || || ||| | || |||| ||||||||| Sbjct 456087 TGCACCTTCCACAAGTATGGTGCCTCCGGATCGCTGCAGAAGCACGACTCCCTCTGCATC 456146 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCT 3481 || || |||| | || |||||||||| |||| | ||| ||||||||||||||| Sbjct 456147 CTGCCACTGAACATCGTGAACGAGAAGACCTACGTGTTCATCTGGTTCTGGTTCT 456201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12476885206500