Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq22232 174 1e-38 >seq22232 Length=226448 Score = 174 bits (192), Expect = 1e-38 Identities = 426/639 (67%), Gaps = 30/639 (5%) Strand=Plus/Plus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194 || ||||| || || || ||| |||| ||| | || ||| |||| || | ||| Sbjct 53797 GGGAAGGGTCGCGGCGTACGCTTCAGTTGCTCCTTTAATGGGTCTACGTGATTCAGATAG 53856 Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254 | ||||| ||| || |||||||| | || || || || | ||||| ||||||||||| Sbjct 53857 ACGTGGGTATCGCCAAACGTGTGCACGAAGTCGCCAGGCTTCAGACCCGTAACATGAGCG 53916 Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314 | ||| | ||| | |||| ||| ||| |||||||| || || |||| |||||||| Sbjct 53917 ATCATGTGAGTGAGAAGGGCGTAGGAGGCGATGTTAAAGGGCACGCCCAGGCCCATGTCG 53976 Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG------TCAGCTACATAAAATTGA 20368 | |||||| |||||||| ||||| || || ||| | | || || || || Sbjct 53977 GCGCTCCTCTGGTACAGCTGGCAGGAGAGTTCGCCGCGCGTCTGGGAGACGTAGAACTGC 54036 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428 || |||| || ||||| ||||||||| || | ||| | || ||||| || || Sbjct 54037 GCTAGGCAGTGGCACGGCGGCAGCGCCATCTTCGGTATGTCTACTGGATTCCAAGCTGAC 54096 Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGT-ACGACAATTG 20487 || || || | ||||| ||||| || || || || | | | ||| ||| || Sbjct 54097 ATGATAATGCGCCTATCCGAGGGATTCTTCTTGATGGTGTCGATTACCTGACG-CAACTG 54155 Query 20488 GTCAAACCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAAGTGCC 20546 ||| | |||| || |||||||| | || | || | | ||| | || |||||||||| Sbjct 54156 GTCGATGCCCTTTCCAGTATAGTCGTCCTCGCAGGTGC-CATACTCTGCGCCAAAGTGCC 54214 Query 20547 TCCACTGGAAACCGTAAACAGGTCCCAAATCCCC-----CTCCCTTC-TGTGCGCCAGGC 20600 |||||||||||| || || || |||| ||| || | | || | ||||| ||| Sbjct 54215 GCCACTGGAAACCATACACCGGGCCCAGATCGCCGACAGCGCGCTCCGTGTGCCCCA--- 54271 Query 20601 CGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTG 20660 | | ||||||||||||||| || || |||||| | | ||| |||||| Sbjct 54272 ---GATTGTCCAGGAACTCCCTGGTGCTGTTCCCGTCCCAGAAGTGCACT----TTCTTG 54324 Query 20661 ----AAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACG 20716 ||| | ||| ||| || | || || |||||| |||||||||| | || Sbjct 54325 GCCTGCAGCAGCTTGGCGTCCGTTTTGCCGGCCACAAACCAGAGCAGCTCTTCGGCCACA 54384 Query 20717 CCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAG 20755 || || |||| || ||||| ||||| |||| |||||| Sbjct 54385 CCGCGAAAAAAGACGCGCTTGGTGGTCAGTAGAGGAAAG 54423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441246903925960