Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq22232 174 1e-38
>seq22232
Length=226448
Score = 174 bits (192), Expect = 1e-38
Identities = 426/639 (67%), Gaps = 30/639 (5%)
Strand=Plus/Plus
Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194
|| ||||| || || || ||| |||| ||| | || ||| |||| || | |||
Sbjct 53797 GGGAAGGGTCGCGGCGTACGCTTCAGTTGCTCCTTTAATGGGTCTACGTGATTCAGATAG 53856
Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254
| ||||| ||| || |||||||| | || || || || | ||||| |||||||||||
Sbjct 53857 ACGTGGGTATCGCCAAACGTGTGCACGAAGTCGCCAGGCTTCAGACCCGTAACATGAGCG 53916
Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314
| ||| | ||| | |||| ||| ||| |||||||| || || |||| ||||||||
Sbjct 53917 ATCATGTGAGTGAGAAGGGCGTAGGAGGCGATGTTAAAGGGCACGCCCAGGCCCATGTCG 53976
Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG------TCAGCTACATAAAATTGA 20368
| |||||| |||||||| ||||| || || ||| | | || || || ||
Sbjct 53977 GCGCTCCTCTGGTACAGCTGGCAGGAGAGTTCGCCGCGCGTCTGGGAGACGTAGAACTGC 54036
Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428
|| |||| || ||||| ||||||||| || | ||| | || ||||| || ||
Sbjct 54037 GCTAGGCAGTGGCACGGCGGCAGCGCCATCTTCGGTATGTCTACTGGATTCCAAGCTGAC 54096
Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGT-ACGACAATTG 20487
|| || || | ||||| ||||| || || || || | | | ||| ||| ||
Sbjct 54097 ATGATAATGCGCCTATCCGAGGGATTCTTCTTGATGGTGTCGATTACCTGACG-CAACTG 54155
Query 20488 GTCAAACCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAAGTGCC 20546
||| | |||| || |||||||| | || | || | | ||| | || ||||||||||
Sbjct 54156 GTCGATGCCCTTTCCAGTATAGTCGTCCTCGCAGGTGC-CATACTCTGCGCCAAAGTGCC 54214
Query 20547 TCCACTGGAAACCGTAAACAGGTCCCAAATCCCC-----CTCCCTTC-TGTGCGCCAGGC 20600
|||||||||||| || || || |||| ||| || | | || | ||||| |||
Sbjct 54215 GCCACTGGAAACCATACACCGGGCCCAGATCGCCGACAGCGCGCTCCGTGTGCCCCA--- 54271
Query 20601 CGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTG 20660
| | ||||||||||||||| || || |||||| | | ||| ||||||
Sbjct 54272 ---GATTGTCCAGGAACTCCCTGGTGCTGTTCCCGTCCCAGAAGTGCACT----TTCTTG 54324
Query 20661 ----AAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACG 20716
||| | ||| ||| || | || || |||||| |||||||||| | ||
Sbjct 54325 GCCTGCAGCAGCTTGGCGTCCGTTTTGCCGGCCACAAACCAGAGCAGCTCTTCGGCCACA 54384
Query 20717 CCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAG 20755
|| || |||| || ||||| ||||| |||| ||||||
Sbjct 54385 CCGCGAAAAAAGACGCGCTTGGTGGTCAGTAGAGGAAAG 54423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441246903925960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |