Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5502 147 5e-30 seq22190 132 1e-25 seq20501 131 4e-25 seq22266 100 7e-16 >seq5502 Length=68615 Score = 147 bits (162), Expect = 5e-30 Identities = 175/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||||||||||| || || | |||| ||| ||| || ||||| || |||| Sbjct 6500 CATG-CCACCGCGGAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGT 6558 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || ||||| || || ||||| ||||| || |||||||| || || Sbjct 6559 CGGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTG---AT 6615 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| ||||| || |||||||| || || || ||||| ||||| || | || | Sbjct 6616 CTGGGGGAATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATG 6675 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| || || ||||||| ||||| ||||| || ||||| Sbjct 6676 GCTCCACTTCGAGAGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730 Score = 145 bits (160), Expect = 2e-29 Identities = 172/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||||||||||| || || | |||| ||| ||| || ||||| || |||| Sbjct 6272 CATG-CCACCGCGGAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGT 6330 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 6331 CCGAAAGGGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTG 6390 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| || || || |||||||| || || ||||| ||||| || | ||| | | Sbjct 6391 GTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCT 6450 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| || ||||| || ||||| ||||| ||||| |||||||| Sbjct 6451 CAACCTCCAGCGTAATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 6502 Score = 114 bits (126), Expect = 3e-20 Identities = 168/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || | |||| ||| ||| || ||||| || |||| Sbjct 6044 CATG-CCACCGCGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGT 6102 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || ||||| ||||| | || || || || |||||||||||||| || || Sbjct 6103 CGGAAAGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTG---AT 6159 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || || || |||||||| || || ||||| || || || | ||| | Sbjct 6160 CTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATG 6219 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || || ||||| ||||| ||||| || ||||| Sbjct 6220 GCTCCACCTCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6274 Score = 113 bits (124), Expect = 1e-19 Identities = 176/248 (71%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || | |||| ||| ||| || ||||| || |||| Sbjct 7184 CATG-CCACCGCGAAGACGGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGT 7242 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || ||||| ||||| | || || || || |||||||||||||| || | Sbjct 7243 CGGAAAGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTG---GT 7299 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || || |||||||| || || || || || || || || | |||| | Sbjct 7300 CTGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTTACATTCTCGATCGTATCGGAAG 7359 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG- 288477 || || || | || || ||||| || |||| ||||| || || ||||||||| || Sbjct 7360 GCTCCACCTCCAAAGTAATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATTTTGG 7419 Query 288478 -TTATTCT 288484 ||||||| Sbjct 7420 ATTATTCT 7427 >seq22190 Length=927835 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | ||| | ||| || || ||||| || ||||||| Sbjct 837751 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 837692 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||||||||| || || || || || || ||||||| |||||| || |||||| Sbjct 837691 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGG---TCTGGG 837635 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || ||||||||||| || |||||||| || || | |||| | || Sbjct 837634 GGAATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCG 837575 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || ||||||||||| || |||||||| Sbjct 837574 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525 Score = 127 bits (140), Expect = 5e-24 Identities = 146/194 (75%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| | ||||||||||| || || || || || || ||| Sbjct 837487 TCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAG 837428 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||||| || ||||| || ||||||||||| || |||||| Sbjct 837427 ATCAAACGCTGCTGG---TCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTCACG 837371 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || || ||||| ||||| || || ||||||||| Sbjct 837370 TTCTCGATGGTATCGGAGGGCTCGACCTCAAG-GTGATGGTCTTGCCAGTGAGAGTCTTG 837312 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 837311 ACAAAGATCTGCAT 837298 >seq20501 Length=31302 Score = 131 bits (144), Expect = 4e-25 Identities = 153/204 (75%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| | ||| || || || ||||| | || || || |||||| Sbjct 11153 TCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAG 11212 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||| || ||||||||||| ||||| || || ||||| || Sbjct 11213 ATCAGACGCTGCTG---ATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACA 11269 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| || || ||| || || || ||||| ||||| || || || ||||| Sbjct 11270 TTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTA 11329 Query 288460 ACGAATATCTGCATTATGTTATTC 288483 ||||| |||||||| || ||||| Sbjct 11330 ACGAAGATCTGCATCTTG-TATTC 11352 >seq22266 Length=384576 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| || || || ||||| || ||||| | Sbjct 109157 CCACCACGCAGGCGGAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 109216 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||||||||| || ||||||| Sbjct 109217 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG---ATCTGGG 109273 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || ||||| || || || | || | || Sbjct 109274 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCC 109333 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||| || || || ||||| || ||||| Sbjct 109334 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 109383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179309506286282