Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq5502 147 5e-30
seq22190 132 1e-25
seq20501 131 4e-25
seq22266 100 7e-16
>seq5502
Length=68615
Score = 147 bits (162), Expect = 5e-30
Identities = 175/235 (74%), Gaps = 7/235 (3%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||||||||||| || || | |||| ||| ||| || ||||| || ||||
Sbjct 6500 CATG-CCACCGCGGAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGT 6558
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || ||||| || ||||| || || ||||| ||||| || |||||||| || ||
Sbjct 6559 CGGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTG---AT 6615
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
||||| ||||| || |||||||| || || || ||||| ||||| || | || |
Sbjct 6616 CTGGGGGAATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATG 6675
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| |||||||| ||||| || || ||||||| ||||| ||||| || |||||
Sbjct 6676 GCTCCACTTCGAGAGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730
Score = 145 bits (160), Expect = 2e-29
Identities = 172/232 (74%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||||||||||| || || | |||| ||| ||| || ||||| || ||||
Sbjct 6272 CATG-CCACCGCGGAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGT 6330
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || ||||| || ||||| ||||| ||||| ||||| || ||||| || |||
Sbjct 6331 CCGAAAGGGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTG 6390
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|||||| || || || |||||||| || || ||||| ||||| || | ||| | |
Sbjct 6391 GTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCT 6450
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || ||||| || ||||| || ||||| ||||| ||||| ||||||||
Sbjct 6451 CAACCTCCAGCGTAATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 6502
Score = 114 bits (126), Expect = 3e-20
Identities = 168/235 (71%), Gaps = 7/235 (3%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| |||||||| || | || || | |||| ||| ||| || ||||| || ||||
Sbjct 6044 CATG-CCACCGCGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGT 6102
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || || ||||| ||||| | || || || || |||||||||||||| || ||
Sbjct 6103 CGGAAAGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTG---AT 6159
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
||||| || || || || |||||||| || || ||||| || || || | ||| |
Sbjct 6160 CTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATG 6219
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || || || || || || ||||| ||||| ||||| || |||||
Sbjct 6220 GCTCCACCTCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6274
Score = 113 bits (124), Expect = 1e-19
Identities = 176/248 (71%), Gaps = 9/248 (4%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| |||||||| || | || || | |||| ||| ||| || ||||| || ||||
Sbjct 7184 CATG-CCACCGCGAAGACGGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGT 7242
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || || ||||| ||||| | || || || || |||||||||||||| || |
Sbjct 7243 CGGAAAGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTG---GT 7299
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
||||| || || || |||||||| || || || || || || || || | |||| |
Sbjct 7300 CTGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTTACATTCTCGATCGTATCGGAAG 7359
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG- 288477
|| || || | || || ||||| || |||| ||||| || || ||||||||| ||
Sbjct 7360 GCTCCACCTCCAAAGTAATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATTTTGG 7419
Query 288478 -TTATTCT 288484
|||||||
Sbjct 7420 ATTATTCT 7427
>seq22190
Length=927835
Score = 132 bits (146), Expect = 1e-25
Identities = 168/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || | ||| | ||| || || ||||| || |||||||
Sbjct 837751 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 837692
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||||||||| || || || || || || ||||||| |||||| || ||||||
Sbjct 837691 AAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGG---TCTGGG 837635
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| || ||||||||||| || |||||||| || || | |||| | ||
Sbjct 837634 GGAATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCG 837575
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| || || ||||||||||| || ||||||||
Sbjct 837574 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525
Score = 127 bits (140), Expect = 5e-24
Identities = 146/194 (75%), Gaps = 7/194 (4%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| | ||||||||||| || || || || || || |||
Sbjct 837487 TCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAG 837428
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| |||||| || |||||| || ||||| || ||||||||||| || ||||||
Sbjct 837427 ATCAAACGCTGCTGG---TCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTCACG 837371
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | |||| | || || || || ||||| ||||| || || |||||||||
Sbjct 837370 TTCTCGATGGTATCGGAGGGCTCGACCTCAAG-GTGATGGTCTTGCCAGTGAGAGTCTTG 837312
Query 288460 ACGAATATCTGCAT 288473
|| || ||||||||
Sbjct 837311 ACAAAGATCTGCAT 837298
>seq20501
Length=31302
Score = 131 bits (144), Expect = 4e-25
Identities = 153/204 (75%), Gaps = 7/204 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || |||||||| | ||| || || || ||||| | || || || ||||||
Sbjct 11153 TCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAG 11212
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| || |||| || ||||||||||| ||||| || || ||||| ||
Sbjct 11213 ATCAGACGCTGCTG---ATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACA 11269
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
||||| |||| || || ||| || || || ||||| ||||| || || || |||||
Sbjct 11270 TTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTA 11329
Query 288460 ACGAATATCTGCATTATGTTATTC 288483
||||| |||||||| || |||||
Sbjct 11330 ACGAAGATCTGCATCTTG-TATTC 11352
>seq22266
Length=384576
Score = 100 bits (110), Expect = 7e-16
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || ||||||| || || || ||||| || ||||| |
Sbjct 109157 CCACCACGCAGGCGGAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 109216
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || ||||||||||||||||| || |||||||
Sbjct 109217 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG---ATCTGGG 109273
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || |||||||| || || ||||| || || || | || | ||
Sbjct 109274 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCC 109333
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||| ||||| ||||| || || || ||||| || |||||
Sbjct 109334 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 109383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179309506286282
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |