Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq22136 86.0 1e-11 >seq22136 Length=515022 Score = 86.0 bits (94), Expect = 1e-11 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 |||||||||||||||| || |||||| |||||||| || ||||| || ||||| | Sbjct 289809 CTTATTGGCATGAACTGCGACCTCATGTCGCAGTACATTGAGTTCGTGGCGGACCG---T 289753 Query 243622 TTCATCGCG--CTTGGTTATGAGAAAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATG 243678 || | | | |||| | ||||| | |||||| |||||||||| || ||| ||| Sbjct 289752 TTGCTGGTGGAATTGGGCGTTGGAAAGATCTACAACACCAAGAACCCGTTCAACTTCATG 289693 Query 243679 GAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 ||| | || || || | || || || ||||||||||| ||| Sbjct 289692 GAGATGATCTCCCTGGACGGCAAGACCAACTTCTTCGAGAAG 289651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102557552697650