Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq22190 105 7e-18 seq5502 105 7e-18 seq21516 89.7 6e-13 seq21692 87.8 2e-12 seq20076 86.0 7e-12 seq4557 86.0 7e-12 seq22281 84.2 2e-11 seq22228 84.2 2e-11 seq20002 84.2 2e-11 >seq22190 Length=927835 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||||||||| ||| |||||| || || ||||| || | || || || | Sbjct 837740 ACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCC 837681 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | |||||| ||||| || || | ||||||||||| | || | || ||||| Sbjct 837680 GTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTT 837621 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| |||||| || | || | | || ||| | || || || | ||||| Sbjct 837620 GTCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGAT 837561 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || || ||||| |||||||| ||||| Sbjct 837560 GGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || |||||| || || ||||| || | || || || | Sbjct 837512 ACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCC 837453 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | |||||| ||||| || || | ||||||||||| | || | || ||||| Sbjct 837452 GTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTT 837393 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| |||||| || | || | | || ||| | || || || | ||||| Sbjct 837392 GTCCTGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTC-AAGGTGAT 837334 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || || ||||| |||||||| ||||| Sbjct 837333 GGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298 >seq5502 Length=68615 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| ||||| || | || ||||||||| || |||||||||| || || || | Sbjct 6743 ACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGACAACGTACGTCC 6802 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || || ||||| || || || || | ||||||||| || | || | | |||||| Sbjct 6803 GTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGAATACCCTCCTT 6862 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || || | || | | ||||||| | || || || | || || Sbjct 6863 GTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCGACCTCAAGGGTAAT 6922 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||| || || ||||| || ||||||||||| Sbjct 6923 GGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | |||||| ||||| ||| |||||| || || || ||||| | | Sbjct 5820 CCTCCGCGGAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGAC 5879 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || | |||||| || ||||| || | |||||||| || | || Sbjct 5880 AGAGTGCGTCCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 5939 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||||||| ||| || || | || | | || || | ||| || Sbjct 5940 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGACT 5999 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || | |||||||| ||||||||||| Sbjct 6000 TCCAAGGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6046 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| ||||| || || ||||| || | || || || | || || Sbjct 6066 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCA 6125 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || || || |||||||| || | || | | |||||||||| | Sbjct 6126 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 6185 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || || | || | | ||||||| | ||||| || | || ||||||||| Sbjct 6186 ATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCCACCTCAAGGGTAATGGTTTTG 6245 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| || ||||||||||| Sbjct 6246 CCAGTCAGGGTCTTCACGAAGATTTGCAT 6274 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| ||||| || || ||||| || | || || || | || || Sbjct 6522 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCC 6581 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||| |||||||| ||||| |||||||| || | || | | |||||| ||| || Sbjct 6582 AACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCC-TG 6640 Query 42120 ATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | || | || | | | | ||||| | ||||| |||| ||||||||||| Sbjct 6641 AATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGAGTGATGGTTTT 6700 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| ||||||||||| Sbjct 6701 TCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| ||||| || || ||||| || | || || || | || || Sbjct 7206 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCA 7265 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || || || ||||||||||| | || | || |||||| ||| || Sbjct 7266 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCC-TG 7324 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | || | || | || | | ||| ||| | ||||| || | || ||||| || Sbjct 7325 AATCTTGGCCTTTACATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCTT 7384 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| || | ||||| |||||||| |||||||| Sbjct 7385 GCCAGTCAATGTCTTCACAAAGATCTGCATTTT 7417 >seq21516 Length=453175 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 212361 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 212420 Query 57065 TATACTACCGAGGA--TTGAATATAT 57088 ||||||| |||||| ||||| |||| Sbjct 212421 TATACTATCGAGGACCTTGAAAATAT 212446 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 171444 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 171503 Query 57066 ATACTACCGAGGATT 57080 |||||| |||||||| Sbjct 171504 ATACTATCGAGGATT 171518 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 165815 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 165756 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 165755 TATACTATCGAGGA 165742 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 166127 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 166186 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 166187 TATACTATCGAGGA 166200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 245477 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 245536 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 245537 ATACTATCGAGGAT 245550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 327333 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 327392 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 327393 ATACTATCGAGGAT 327406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 327595 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 327536 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 327535 ATACTATCGAGGAT 327522 >seq21692 Length=958343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 56993 TTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052 || ||| || || ||||| || | | ||| |||||| ||||||||||||||||||||| Sbjct 42445 TTTTGATAACTTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGG 42504 Query 57053 CATACTCACCACTATACTACCGAGGA 57078 ||||| |||||||||||| |||||| Sbjct 42505 GATACTAACCACTATACTATCGAGGA 42530 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || || | || ||||| || | | ||| |||||| ||||||||||||||||||||| | Sbjct 42321 ATTAAGACTTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 42262 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| |||||||||||| |||||| Sbjct 42261 TACTAACCACTATACTATCGAGGA 42238 >seq20076 Length=424525 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 18185 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 18126 Query 57065 TATACTACCGAGGAT 57079 ||||||| ||||||| Sbjct 18125 TATACTATCGAGGAT 18111 >seq4557 Length=397059 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 221157 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 221098 Query 57065 TATACTACCGAGG-ATTGA 57082 ||||||| ||||| ||||| Sbjct 221097 TATACTATCGAGGAATTGA 221079 >seq22281 Length=154308 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 151222 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 151281 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 151282 ATACTATCGAGGAT 151295 >seq22228 Length=358660 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 193192 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 193251 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 193252 ATACTATCGAGGAT 193265 >seq20002 Length=45248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 32450 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 32509 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 32510 ATACTATCGAGGAT 32523 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 32083 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 32024 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 32023 ATACTATCGAGGA 32011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543057855338960