Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq8501 134 1e-26 seq8502 132 5e-26 seq1813 132 5e-26 >seq8501 Length=20033 Score = 134 bits (148), Expect = 1e-26 Identities = 269/396 (68%), Gaps = 7/396 (2%) Strand=Plus/Plus Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987 || ||| ||||||| |||||||| |||| | | ||| ||||| ||| || || || Sbjct 1175 CCGCAGCTGTCTTCCTGTTTCCTTTTGACCATGACGGCTGACTCGATCGAGGGCATCTTT 1234 Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047 | | | |||| || | ||||| |||| || || || || || | | ||| Sbjct 1235 AAATCGGTGGAACACTGCGCCATGATCTCGAAATCGGCAGGTGGCATTGGACTGAATGTT 1294 Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107 || | | || || | || ||| || |||| || |||||||| ||||| ||||| Sbjct 1295 CATTGCATCCGGGCAAAAGGCACCTCTATTTGCGGCACGAATGGCACTTCCAATGGCCTA 1354 Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167 || || ||||| ||||||||||||| | ||| ||||| ||||| |||||||| || | | Sbjct 1355 GTTCCCATGCTGAGGGTCTTCAACAATGTGGCACGCTATGTGGATCAGGGTGGCGGCAAG 1414 Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227 | ||| | || || | || || |||||||||||| |||| || | || | Sbjct 1415 CGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGATGTCTTTGAGTTTCTG 1474 Query 94228 GACCTGCGAAAGAACCACGGCAACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGCT 94284 || || |||| ||| ||||| || ||||| | ||| | || || || ||||| Sbjct 1475 GAACTCAGAAA-AACACTGGCAAGGA---GGAGAATCGCGCCCGCGATCTGTTTTACGCC 1530 Query 94285 CTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 || ||| | || || || || ||||||||||||||| Sbjct 1531 CTTTGGATACCCGATCTCTTCATGAAACGCGTCGAG 1566 Score = 104 bits (114), Expect = 2e-17 Identities = 362/558 (65%), Gaps = 14/558 (3%) Strand=Plus/Plus Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 || || |||| | |||| || | ||||| || ||| |||| ||||| |||| || || Sbjct 1963 AATCTCAACAAGATAATTGATATCAACTTTTATCCCCTCCCAGAGGCAAAGAAATCCAAT 2022 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 ||| ||||| ||| | |||||||| || ||||||||||| ||||| || | | ||| Sbjct 2023 TTGAGACATCGTCCCGTGGGCATCGGTGTTCAGGGTTTCGCTGACGCCTTGATTCTCATG 2082 Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 || | || || || || || || | ||||||| | | ||||| |||| ||| Sbjct 2083 CGATTCCCATATGAAAGTGAAGAAGCCGGTCTTTTGAATCAGCAGATATTTGAAACGATT 2142 Query 94909 TATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGA 94967 || ||||| ||| | ||| | | | || ||| | ||| ||| | || || | || Sbjct 2143 TACTACGGTGCCCTGGAAGCCAGCTGTGAACTGGCGCAGGTCGAA----GGTCCCTATGA 2198 Query 94968 ATCGTTCCGCGGAT-CGCCCTTGGAAC-AGGGCATT-TTTCAGTTCGACCTCTGGGGTGT 95024 | | | || | |||| || | | || ||| | |||| |||| | |||| Sbjct 2199 GTACCTATGAGGGTAAGCCCCGTGAGCAAAGGAATTCTAGCAGTACGACATGTGGGACAA 2258 Query 95025 GAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAA---CACGG 95081 |||| || |||| || ||| || ||| || |||||| ||||| Sbjct 2259 ACAGCCAACGAACCTGTGGGATTGGCAAAAACTA---AAGGAGTCCATCAAAAAGCACGG 2315 Query 95082 TGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGG 95141 ||| ||| | |||||||| ||||| ||||| || || || || || || || | || Sbjct 2316 TGTCCGGAACTCCCTGCTTGTTGCCCCTATGCCTACTGCGTCTACTGCTCAAATTATGGG 2375 Query 95142 CAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGG 95201 |||||||| || ||||| |||| ||| | ||| | || | ||| || || || | || Sbjct 2376 AAACAACGAATCTTTCGAGCCCTATACCACGAACATTTATACCAGACGAGTTCTGTCTGG 2435 Query 95202 GGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGG 95261 ||||||| || ||||| | || | | ||||| | || || | |||||| Sbjct 2436 TGAATTCCAGGTGGTCAACCATCATTTGTTGAGGGACTTAACTGAGCTCGACTTGTGGGA 2495 Query 95262 TGACAAGGTCAAGAACCA 95279 |||| | | |||||||| Sbjct 2496 TGACGACATGAAGAACCA 2513 >seq8502 Length=4749 Score = 132 bits (146), Expect = 5e-26 Identities = 270/397 (68%), Gaps = 8/397 (2%) Strand=Plus/Minus Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987 || ||| ||||||| |||||||| |||| | | ||| ||||| ||| || || || Sbjct 2780 CCGCAGCTGTCTTCCTGTTTCCTTTTGACCATGACGGCTGACTCGATCGAGGGCATCTTT 2721 Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047 | | | |||| || | ||||| |||| || || || || || | | ||| Sbjct 2720 AAATCGGTGGAACACTGCGCCATGATCTCGAAATCGGCAGGTGGCATTGGACTGAATGTT 2661 Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107 || | | || || | || ||| || |||| || |||||||| ||||| ||||| Sbjct 2660 CATTGCATCCGGGCAAAAGGCACCTCTATTTGCGGCACGAATGGCACTTCCAATGGCCTA 2601 Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167 || || ||||| ||||||||||||| | ||| ||||| ||||| |||||||| || | | Sbjct 2600 GTTCCCATGCTGAGGGTCTTCAACAATGTGGCACGCTATGTGGATCAGGGTGGCGGCAAG 2541 Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227 | ||| | || || | || || |||||||||||| |||| || | || | Sbjct 2540 CGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGATGTCTTTGAGTTTCTG 2481 Query 94228 GACCTGCGAAAGAACCAC-GGCAACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGC 94283 || || | | | || ||| ||||| || ||||| | ||| | || || || ||||| Sbjct 2480 GAACT-CAAGAAAAACACTGGCAAGGA---GGAGAATCGCGCCCGCGATCTGTTTTACGC 2425 Query 94284 TCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 || ||| | || || || || ||||||||||||||| Sbjct 2424 CCTTTGGATACCCGATCTCTTCATGAAACGCGTCGAG 2388 Score = 107 bits (118), Expect = 2e-18 Identities = 360/556 (65%), Gaps = 12/556 (2%) Strand=Plus/Minus Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 || || |||| | |||| || | ||||| || ||| |||| ||||| |||| || || Sbjct 1991 AATCTCAACAAGATAATTGATATCAACTTTTATCCCCTCCCAGAGGCAAAGAAATCCAAT 1932 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 ||| ||||| ||| | |||||||| || ||||||||||| ||||| || | | ||| Sbjct 1931 TTGAGACATCGTCCCGTGGGCATCGGTGTTCAGGGTTTCGCTGACGCCTTGATTCTCATG 1872 Query 94849 CGTCTGCCCTACGACTCTGTCGACG-CGGCGGGTTTGAATTTGAACATATTCGAAAGCAT 94907 || | || || || || || | ||| ||||||| | | ||||| |||| || Sbjct 1871 CGATTCCCATATGAAAGTGAAGAAGCCGGTCTTTTTGAATCAGCAGATATTTGAAACGAT 1812 Query 94908 TTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACG 94966 ||| ||||| ||| | ||| | | | || ||| | ||| ||| | || || | | Sbjct 1811 TTACTACGGTGCCCTGGAAGCCAGCTGTGAACTGGCGCAGGTCGAA----GGTCCCTATG 1756 Query 94967 AATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026 | | | ||| ||| || | || ||| | |||| |||| | |||| Sbjct 1755 AGACCTATGAGGGAAGCCCCGTGAGCAAAGGAATTCTGCAGTACGACATGTGGGACAAAC 1696 Query 95027 AGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAA---CACGGTG 95083 |||| || |||| || ||| || ||| || |||||| ||||||| Sbjct 1695 AGCCAACGAACCTGTGGGATTGGCAAAAACTA---AAGGAGTCCATCAAAAAGCACGGTG 1639 Query 95084 TGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCA 95143 | ||| | |||||||| ||||| ||||| || || || || || || || | || | Sbjct 1638 TCCGGAACTCCCTGCTTGTTGCCCCTATGCCTACTGCGTCTACTGCTCAAATTATGGGAA 1579 Query 95144 ACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGG 95203 ||||||| || ||||| |||| ||| | ||| | || | ||| || || || | || | Sbjct 1578 ACAACGAATCTTTCGAGCCCTATACCACGAACATTTATACCAGACGAGTTCTGTCTGGTG 1519 Query 95204 AATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTG 95263 |||||| || ||||| | || | | ||||| | || || | |||||| || Sbjct 1518 AATTCCAGGTGGTCAACCATCATTTGTTGAGGGACTTAACTGAGCTCGACTTGTGGGATG 1459 Query 95264 ACAAGGTCAAGAACCA 95279 || | | |||||||| Sbjct 1458 ACGACATGAAGAACCA 1443 >seq1813 Length=4749 Score = 132 bits (146), Expect = 5e-26 Identities = 270/397 (68%), Gaps = 8/397 (2%) Strand=Plus/Minus Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987 || ||| ||||||| |||||||| |||| | | ||| ||||| ||| || || || Sbjct 2779 CCGCAGCTGTCTTCCTGTTTCCTTTTGACCATGACGGCTGACTCGATCGAGGGCATCTTT 2720 Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047 | | | |||| || | ||||| |||| || || || || || | | ||| Sbjct 2719 AAATCGGTGGAACACTGCGCCATGATCTCGAAATCGGCAGGTGGCATTGGACTGAATGTT 2660 Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107 || | | || || | || ||| || |||| || |||||||| ||||| ||||| Sbjct 2659 CATTGCATCCGGGCAAAAGGCACCTCTATTTGCGGCACGAATGGCACTTCCAATGGCCTA 2600 Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167 || || ||||| ||||||||||||| | ||| ||||| ||||| |||||||| || | | Sbjct 2599 GTTCCCATGCTGAGGGTCTTCAACAATGTGGCACGCTATGTGGATCAGGGTGGCGGCAAG 2540 Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227 | ||| | || || | || || |||||||||||| |||| || | || | Sbjct 2539 CGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGATGTCTTTGAGTTTCTG 2480 Query 94228 GACCTGCGAAAGAACCAC-GGCAACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGC 94283 || || | | | || ||| ||||| || ||||| | ||| | || || || ||||| Sbjct 2479 GAACT-CAAGAAAAACACTGGCAAGGA---GGAGAATCGCGCCCGCGATCTGTTTTACGC 2424 Query 94284 TCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 || ||| | || || || || ||||||||||||||| Sbjct 2423 CCTTTGGATACCCGATCTCTTCATGAAACGCGTCGAG 2387 Score = 109 bits (120), Expect = 5e-19 Identities = 359/555 (65%), Gaps = 11/555 (2%) Strand=Plus/Minus Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 || || |||| | |||| || | ||||| || ||| |||| ||||| |||| || || Sbjct 1990 AATCTCAACAAGATAATTGATATCAACTTTTATCCCCTCCCAGAGGCAAAGAAATCCAAT 1931 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 ||| ||||| ||| | |||||||| || ||||||||||| ||||| || | | ||| Sbjct 1930 TTGAGACATCGTCCCGTGGGCATCGGTGTTCAGGGTTTCGCTGACGCCTTGATTCTCATG 1871 Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 || | || || || || || || | ||||||| | | ||||| |||| ||| Sbjct 1870 CGATTCCCATATGAAAGTGAAGAGGCCGGTCTTTTGAATCAGCAGATATTTGAAACGATT 1811 Query 94909 TATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGA 94967 || ||||| ||| | ||| | | | || ||| | ||| ||| | || || | || Sbjct 1810 TACTACGGTGCCCTGGAAGCCAGCTGTGAACTGGCGCAGGTCGAA----GGTCCCTATGA 1755 Query 94968 ATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAA 95027 | | ||| ||| || | || ||| | |||| |||| | |||| | Sbjct 1754 GACCTATGAGGGAAGCCCCGTGAGCAAAGGAATTCTGCAGTACGACATGTGGGACAAACA 1695 Query 95028 GCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAA---CACGGTGT 95084 ||| || |||| || ||| || ||| || |||||| |||||||| Sbjct 1694 GCCAACGAACCTGTGGGATTGGCAAAAACTA---AAGGAGTCCATCAAAAAGCACGGTGT 1638 Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144 ||| | |||||||| ||||| ||||| || || || || || || || | || || Sbjct 1637 CCGGAACTCCCTGCTTGTTGCCCCTATGCCTACTGCGTCTACTGCTCAAATTATGGGAAA 1578 Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204 |||||| || ||||| |||| ||| | ||| | || | ||| || || || | || || Sbjct 1577 CAACGAATCTTTCGAGCCCTATACCACGAACATTTATACCAGACGAGTTCTGTCTGGTGA 1518 Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGA 95264 ||||| || ||||| | || | | ||||| | || || | |||||| ||| Sbjct 1517 ATTCCAGGTGGTCAACCATCATTTGTTGAGGGACTTAACTGAGCTCGACTTGTGGGATGA 1458 Query 95265 CAAGGTCAAGAACCA 95279 | | | |||||||| Sbjct 1457 CGACATGAAGAACCA 1443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494582086391240