Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq8501 134 1e-26
seq8502 132 5e-26
seq1813 132 5e-26
>seq8501
Length=20033
Score = 134 bits (148), Expect = 1e-26
Identities = 269/396 (68%), Gaps = 7/396 (2%)
Strand=Plus/Plus
Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987
|| ||| ||||||| |||||||| |||| | | ||| ||||| ||| || || ||
Sbjct 1175 CCGCAGCTGTCTTCCTGTTTCCTTTTGACCATGACGGCTGACTCGATCGAGGGCATCTTT 1234
Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047
| | | |||| || | ||||| |||| || || || || || | | |||
Sbjct 1235 AAATCGGTGGAACACTGCGCCATGATCTCGAAATCGGCAGGTGGCATTGGACTGAATGTT 1294
Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107
|| | | || || | || ||| || |||| || |||||||| ||||| |||||
Sbjct 1295 CATTGCATCCGGGCAAAAGGCACCTCTATTTGCGGCACGAATGGCACTTCCAATGGCCTA 1354
Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167
|| || ||||| ||||||||||||| | ||| ||||| ||||| |||||||| || | |
Sbjct 1355 GTTCCCATGCTGAGGGTCTTCAACAATGTGGCACGCTATGTGGATCAGGGTGGCGGCAAG 1414
Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227
| ||| | || || | || || |||||||||||| |||| || | || |
Sbjct 1415 CGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGATGTCTTTGAGTTTCTG 1474
Query 94228 GACCTGCGAAAGAACCACGGCAACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGCT 94284
|| || |||| ||| ||||| || ||||| | ||| | || || || |||||
Sbjct 1475 GAACTCAGAAA-AACACTGGCAAGGA---GGAGAATCGCGCCCGCGATCTGTTTTACGCC 1530
Query 94285 CTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320
|| ||| | || || || || |||||||||||||||
Sbjct 1531 CTTTGGATACCCGATCTCTTCATGAAACGCGTCGAG 1566
Score = 104 bits (114), Expect = 2e-17
Identities = 362/558 (65%), Gaps = 14/558 (3%)
Strand=Plus/Plus
Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788
|| || |||| | |||| || | ||||| || ||| |||| ||||| |||| || ||
Sbjct 1963 AATCTCAACAAGATAATTGATATCAACTTTTATCCCCTCCCAGAGGCAAAGAAATCCAAT 2022
Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848
||| ||||| ||| | |||||||| || ||||||||||| ||||| || | | |||
Sbjct 2023 TTGAGACATCGTCCCGTGGGCATCGGTGTTCAGGGTTTCGCTGACGCCTTGATTCTCATG 2082
Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908
|| | || || || || || || | ||||||| | | ||||| |||| |||
Sbjct 2083 CGATTCCCATATGAAAGTGAAGAAGCCGGTCTTTTGAATCAGCAGATATTTGAAACGATT 2142
Query 94909 TATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGA 94967
|| ||||| ||| | ||| | | | || ||| | ||| ||| | || || | ||
Sbjct 2143 TACTACGGTGCCCTGGAAGCCAGCTGTGAACTGGCGCAGGTCGAA----GGTCCCTATGA 2198
Query 94968 ATCGTTCCGCGGAT-CGCCCTTGGAAC-AGGGCATT-TTTCAGTTCGACCTCTGGGGTGT 95024
| | | || | |||| || | | || ||| | |||| |||| | ||||
Sbjct 2199 GTACCTATGAGGGTAAGCCCCGTGAGCAAAGGAATTCTAGCAGTACGACATGTGGGACAA 2258
Query 95025 GAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAA---CACGG 95081
|||| || |||| || ||| || ||| || |||||| |||||
Sbjct 2259 ACAGCCAACGAACCTGTGGGATTGGCAAAAACTA---AAGGAGTCCATCAAAAAGCACGG 2315
Query 95082 TGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGG 95141
||| ||| | |||||||| ||||| ||||| || || || || || || || | ||
Sbjct 2316 TGTCCGGAACTCCCTGCTTGTTGCCCCTATGCCTACTGCGTCTACTGCTCAAATTATGGG 2375
Query 95142 CAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGG 95201
|||||||| || ||||| |||| ||| | ||| | || | ||| || || || | ||
Sbjct 2376 AAACAACGAATCTTTCGAGCCCTATACCACGAACATTTATACCAGACGAGTTCTGTCTGG 2435
Query 95202 GGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGG 95261
||||||| || ||||| | || | | ||||| | || || | ||||||
Sbjct 2436 TGAATTCCAGGTGGTCAACCATCATTTGTTGAGGGACTTAACTGAGCTCGACTTGTGGGA 2495
Query 95262 TGACAAGGTCAAGAACCA 95279
|||| | | ||||||||
Sbjct 2496 TGACGACATGAAGAACCA 2513
>seq8502
Length=4749
Score = 132 bits (146), Expect = 5e-26
Identities = 270/397 (68%), Gaps = 8/397 (2%)
Strand=Plus/Minus
Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987
|| ||| ||||||| |||||||| |||| | | ||| ||||| ||| || || ||
Sbjct 2780 CCGCAGCTGTCTTCCTGTTTCCTTTTGACCATGACGGCTGACTCGATCGAGGGCATCTTT 2721
Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047
| | | |||| || | ||||| |||| || || || || || | | |||
Sbjct 2720 AAATCGGTGGAACACTGCGCCATGATCTCGAAATCGGCAGGTGGCATTGGACTGAATGTT 2661
Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107
|| | | || || | || ||| || |||| || |||||||| ||||| |||||
Sbjct 2660 CATTGCATCCGGGCAAAAGGCACCTCTATTTGCGGCACGAATGGCACTTCCAATGGCCTA 2601
Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167
|| || ||||| ||||||||||||| | ||| ||||| ||||| |||||||| || | |
Sbjct 2600 GTTCCCATGCTGAGGGTCTTCAACAATGTGGCACGCTATGTGGATCAGGGTGGCGGCAAG 2541
Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227
| ||| | || || | || || |||||||||||| |||| || | || |
Sbjct 2540 CGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGATGTCTTTGAGTTTCTG 2481
Query 94228 GACCTGCGAAAGAACCAC-GGCAACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGC 94283
|| || | | | || ||| ||||| || ||||| | ||| | || || || |||||
Sbjct 2480 GAACT-CAAGAAAAACACTGGCAAGGA---GGAGAATCGCGCCCGCGATCTGTTTTACGC 2425
Query 94284 TCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320
|| ||| | || || || || |||||||||||||||
Sbjct 2424 CCTTTGGATACCCGATCTCTTCATGAAACGCGTCGAG 2388
Score = 107 bits (118), Expect = 2e-18
Identities = 360/556 (65%), Gaps = 12/556 (2%)
Strand=Plus/Minus
Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788
|| || |||| | |||| || | ||||| || ||| |||| ||||| |||| || ||
Sbjct 1991 AATCTCAACAAGATAATTGATATCAACTTTTATCCCCTCCCAGAGGCAAAGAAATCCAAT 1932
Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848
||| ||||| ||| | |||||||| || ||||||||||| ||||| || | | |||
Sbjct 1931 TTGAGACATCGTCCCGTGGGCATCGGTGTTCAGGGTTTCGCTGACGCCTTGATTCTCATG 1872
Query 94849 CGTCTGCCCTACGACTCTGTCGACG-CGGCGGGTTTGAATTTGAACATATTCGAAAGCAT 94907
|| | || || || || || | ||| ||||||| | | ||||| |||| ||
Sbjct 1871 CGATTCCCATATGAAAGTGAAGAAGCCGGTCTTTTTGAATCAGCAGATATTTGAAACGAT 1812
Query 94908 TTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACG 94966
||| ||||| ||| | ||| | | | || ||| | ||| ||| | || || | |
Sbjct 1811 TTACTACGGTGCCCTGGAAGCCAGCTGTGAACTGGCGCAGGTCGAA----GGTCCCTATG 1756
Query 94967 AATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026
| | | ||| ||| || | || ||| | |||| |||| | ||||
Sbjct 1755 AGACCTATGAGGGAAGCCCCGTGAGCAAAGGAATTCTGCAGTACGACATGTGGGACAAAC 1696
Query 95027 AGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAA---CACGGTG 95083
|||| || |||| || ||| || ||| || |||||| |||||||
Sbjct 1695 AGCCAACGAACCTGTGGGATTGGCAAAAACTA---AAGGAGTCCATCAAAAAGCACGGTG 1639
Query 95084 TGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCA 95143
| ||| | |||||||| ||||| ||||| || || || || || || || | || |
Sbjct 1638 TCCGGAACTCCCTGCTTGTTGCCCCTATGCCTACTGCGTCTACTGCTCAAATTATGGGAA 1579
Query 95144 ACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGG 95203
||||||| || ||||| |||| ||| | ||| | || | ||| || || || | || |
Sbjct 1578 ACAACGAATCTTTCGAGCCCTATACCACGAACATTTATACCAGACGAGTTCTGTCTGGTG 1519
Query 95204 AATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTG 95263
|||||| || ||||| | || | | ||||| | || || | |||||| ||
Sbjct 1518 AATTCCAGGTGGTCAACCATCATTTGTTGAGGGACTTAACTGAGCTCGACTTGTGGGATG 1459
Query 95264 ACAAGGTCAAGAACCA 95279
|| | | ||||||||
Sbjct 1458 ACGACATGAAGAACCA 1443
>seq1813
Length=4749
Score = 132 bits (146), Expect = 5e-26
Identities = 270/397 (68%), Gaps = 8/397 (2%)
Strand=Plus/Minus
Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987
|| ||| ||||||| |||||||| |||| | | ||| ||||| ||| || || ||
Sbjct 2779 CCGCAGCTGTCTTCCTGTTTCCTTTTGACCATGACGGCTGACTCGATCGAGGGCATCTTT 2720
Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047
| | | |||| || | ||||| |||| || || || || || | | |||
Sbjct 2719 AAATCGGTGGAACACTGCGCCATGATCTCGAAATCGGCAGGTGGCATTGGACTGAATGTT 2660
Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107
|| | | || || | || ||| || |||| || |||||||| ||||| |||||
Sbjct 2659 CATTGCATCCGGGCAAAAGGCACCTCTATTTGCGGCACGAATGGCACTTCCAATGGCCTA 2600
Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167
|| || ||||| ||||||||||||| | ||| ||||| ||||| |||||||| || | |
Sbjct 2599 GTTCCCATGCTGAGGGTCTTCAACAATGTGGCACGCTATGTGGATCAGGGTGGCGGCAAG 2540
Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227
| ||| | || || | || || |||||||||||| |||| || | || |
Sbjct 2539 CGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGATGTCTTTGAGTTTCTG 2480
Query 94228 GACCTGCGAAAGAACCAC-GGCAACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGC 94283
|| || | | | || ||| ||||| || ||||| | ||| | || || || |||||
Sbjct 2479 GAACT-CAAGAAAAACACTGGCAAGGA---GGAGAATCGCGCCCGCGATCTGTTTTACGC 2424
Query 94284 TCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320
|| ||| | || || || || |||||||||||||||
Sbjct 2423 CCTTTGGATACCCGATCTCTTCATGAAACGCGTCGAG 2387
Score = 109 bits (120), Expect = 5e-19
Identities = 359/555 (65%), Gaps = 11/555 (2%)
Strand=Plus/Minus
Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788
|| || |||| | |||| || | ||||| || ||| |||| ||||| |||| || ||
Sbjct 1990 AATCTCAACAAGATAATTGATATCAACTTTTATCCCCTCCCAGAGGCAAAGAAATCCAAT 1931
Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848
||| ||||| ||| | |||||||| || ||||||||||| ||||| || | | |||
Sbjct 1930 TTGAGACATCGTCCCGTGGGCATCGGTGTTCAGGGTTTCGCTGACGCCTTGATTCTCATG 1871
Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908
|| | || || || || || || | ||||||| | | ||||| |||| |||
Sbjct 1870 CGATTCCCATATGAAAGTGAAGAGGCCGGTCTTTTGAATCAGCAGATATTTGAAACGATT 1811
Query 94909 TATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGA 94967
|| ||||| ||| | ||| | | | || ||| | ||| ||| | || || | ||
Sbjct 1810 TACTACGGTGCCCTGGAAGCCAGCTGTGAACTGGCGCAGGTCGAA----GGTCCCTATGA 1755
Query 94968 ATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAA 95027
| | ||| ||| || | || ||| | |||| |||| | |||| |
Sbjct 1754 GACCTATGAGGGAAGCCCCGTGAGCAAAGGAATTCTGCAGTACGACATGTGGGACAAACA 1695
Query 95028 GCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAA---CACGGTGT 95084
||| || |||| || ||| || ||| || |||||| ||||||||
Sbjct 1694 GCCAACGAACCTGTGGGATTGGCAAAAACTA---AAGGAGTCCATCAAAAAGCACGGTGT 1638
Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144
||| | |||||||| ||||| ||||| || || || || || || || | || ||
Sbjct 1637 CCGGAACTCCCTGCTTGTTGCCCCTATGCCTACTGCGTCTACTGCTCAAATTATGGGAAA 1578
Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204
|||||| || ||||| |||| ||| | ||| | || | ||| || || || | || ||
Sbjct 1577 CAACGAATCTTTCGAGCCCTATACCACGAACATTTATACCAGACGAGTTCTGTCTGGTGA 1518
Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGA 95264
||||| || ||||| | || | | ||||| | || || | |||||| |||
Sbjct 1517 ATTCCAGGTGGTCAACCATCATTTGTTGAGGGACTTAACTGAGCTCGACTTGTGGGATGA 1458
Query 95265 CAAGGTCAAGAACCA 95279
| | | ||||||||
Sbjct 1457 CGACATGAAGAACCA 1443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494582086391240
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