Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq21545 109 4e-19 seq20423 91.5 1e-13 seq21441 84.2 2e-11 >seq21545 Length=43261 Score = 109 bits (120), Expect = 4e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 |||||||| || ||||| ||||| | ||||| ||||||||||||| ||| | | Sbjct 36106 ACGGCCGGAGTGCATCGCCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCGCTGCGC 36047 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 | ||||| ||| ||| ||| |||| ||||||| |||| | ||||| | | Sbjct 36046 ATCTTCCTCATGCTGTGCCAGTCGCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGC 35987 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| |||| |||||||||| | | ||||| ||||| || |||||| || | | Sbjct 35986 GACCACCGGGTGCACCACAAGTTCACCGACACACACGCCGATCCCCACAACTCCCGCCGC 35927 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 || |||| ||| | ||| |||| ||||| ||| | ||| ||||||| |||| Sbjct 35926 GGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCCGATGTGA 35872 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 108862 AACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTC 108921 ||||| ||||| | || || | ||||||||||||||||||||||||||||||| ||| Sbjct 32912 AACAAGCTGGTGTCCACGCTGACCATCGGCGAGGGATGGCACAACTACCACCACGTCTTC 32853 Query 108922 CCCTACGACTACAAGGCCGCCGAGTTGGG 108950 |||| ||||||||||| || ||| |||| Sbjct 32852 CCCTGGGACTACAAGGCAGCTGAGCTGGG 32824 >seq20423 Length=38289 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 ||||||||| | | ||||| | || || | ||||||||||||||||| || ||| Sbjct 25951 CAGAACACCCTGTACGACTGGGTTCGGGACCATCGAGTTCACCACAAGTACTCGGAGACG 26010 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 || || || ||||| || |||||||| || | ||||| || ||||||||||| ||| Sbjct 26011 GATGCGGATCCCCACAATGCGAACAGGGGATTTTTCTTCTCCCATGTGGGATGGCTGATG 26070 Query 108568 ATGACCAAGGACCCCGACGTGATCT-CGGC-CGGTCGAAAAATGGACATGACGGACATAT 108625 ||| ||| |||| || || ||| || | ||||| | || ||||||| | |||| Sbjct 26071 ATGCTGAAGCACCCGGAAGT--TCTGCGTCGTGGTCGTCAGATCGACATGA--GCGATAT 26126 Query 108626 ACT--CCGATCCGGTGGTAGTGTGGCACACCAAGTACTTTATTCCTCTTAA 108674 || | ||||| ||||| || ||| || ||||| || || || || Sbjct 26127 TCTGGCGGATCCCGTGGTGCGGTTCCACCAGAAATACTTCATCCCCCTGAA 26177 >seq21441 Length=81305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/92 (80%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| ||||||| |||||||| |||||||| ||||||||||||| ||||||||| | | Sbjct 56574 TGGCCTTCGGCGAAGGATGGCATAACTACCATCACGTGTTCCCCTGGGACTACAAGACGG 56633 Query 108941 CCGAGTTGGGGAACGACT---TTAATTTCACC 108969 ||||||| || || ||| | || |||||| Sbjct 56634 CCGAGTTCGGCAAATACTCGCTGAACTTCACC 56665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381666626478936