Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq22190 104 2e-17
seq5502 89.7 4e-13
>seq22190
Length=927835
Score = 104 bits (114), Expect = 2e-17
Identities = 172/246 (70%), Gaps = 7/246 (3%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| |||| | | || || || |||||||| || || || |||||||| |||
Sbjct 837298 TGCCACCACGCAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG- 837240
Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065
|| || || | ||||| | ||||| || ||| | ||||| ||||| |||||
Sbjct 837239 -GACAAGGTGCGTCCATCTTCCAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGG 837181
Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125
|||||||| |||||||| || ||| || || | || || |||||| | ||
Sbjct 837180 GGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTC 837121
Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT---TGA 15182
|| || || || ||||| || || |||| ||| || |||||||||||||| || |||
Sbjct 837120 AACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAAATTTGCATGTTGGCTGA 837061
Query 15183 AATAAA 15188
| ||||
Sbjct 837060 ATTAAA 837055
Score = 96.9 bits (106), Expect = 2e-15
Identities = 162/231 (70%), Gaps = 5/231 (2%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| |||| | | || || || |||||||| || || || |||||||| |||
Sbjct 837525 TGCCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG- 837467
Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065
|| || || |||| || || || |||||||| | ||||||||||| |||||
Sbjct 837466 -GACAAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGG 837408
Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125
||||| ||||||||||| ||||| || || | || || |||||| ||
Sbjct 837407 GGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTC 837348
Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || ||||| ||||| || || || ||||| || ||||| || |||||
Sbjct 837347 GACCTC-AAGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| |||| | | || ||||| | || || || || || |||||||| ||| |
Sbjct 837751 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCG--G 837694
Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| || || |||| || || || |||||||| | ||||||||||| ||||| |
Sbjct 837693 ACAAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGG 837634
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| ||||||||||| ||||| || || | || || |||||| || |
Sbjct 837633 GAATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGA 837574
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | ||| ||||| || || || ||||| || ||||| || |||||
Sbjct 837573 CCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525
>seq5502
Length=68615
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039
|| || || || || ||||| |||||| ||| | | | ||||| || || |||||
Sbjct 5850 GTGGACTCCTTCTGGATGTTATAATCGGACAGAGTGCGTCCATCTTCCAACTGCTTGCCG 5909
Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTT 15099
||| | ||||||||||| || || |||||||| |||||||| || ||| ||
Sbjct 5910 GCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTC 5969
Query 15100 ACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTT 15159
|| | || || ||||| ||| || || ||||| |||||||| || |||| ||
Sbjct 5970 ACGTTCTCAATGGTATCAGAGGGTTCGACTTCCAAGGTGATGGTTTTTCCGGTCAAGGTC 6029
Query 15160 TTTACAAAAATTTGCAT 15176
||||| || ||||||||
Sbjct 6030 TTTACGAAGATTTGCAT 6046
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | | | ||| || |||||||| || || || || |||||||| |||
Sbjct 6046 TGCCACCGCGAAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 6105
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|| ||| | ||||| | || ||||| || | |||| |||||| || || |
Sbjct 6106 AAAGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGG 6165
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| || |||||||| || ||| || ||| | || || || ||| || |
Sbjct 6166 GAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCCA 6225
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | |||||||||||| || ||||| || || || || ||||||||
Sbjct 6226 CCTCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6274
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | | || || || |||||||| || || ||||| |||||||||||
Sbjct 6730 TGCCACCACGAAGACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCA- 6788
Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065
|| || || |||| || | ||| ||||| || | || || ||||| || ||
Sbjct 6789 -GACAACGTACGTCCGTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGG 6847
Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125
||||| || |||||||| || ||| || ||| | || || || ||| ||
Sbjct 6848 GGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTC 6907
Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || | |||||||||||| || ||||| || || || || ||||||||
Sbjct 6908 GACCTCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357292606939415
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |