Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_011588.1 Length=127615 Score E Sequences producing significant alignments: (Bits) Value seq20167 102 7e-17 >seq20167 Length=269632 Score = 102 bits (112), Expect = 7e-17 Identities = 145/202 (72%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 69531 AATGGTTATGTGTTTTTCTTTTACCGAGAAGTGGCCGTCGAGCATATTAACTGCGGAAAG 69590 || ||||| ||| | ||||| | ||| || || || | ||| ||| |||| ||| ||| Sbjct 233760 AACGGTTACGTGCTGTTCTTCTTCCGCGAGCTGTCCATAGAGTTTATGAACTTCGGCAAG 233819 Query 69591 ACCATTTATTCGAGAGTCGCTCGTGTCTGCAAAAATGATCACGGCGGCCC--ACATCGGT 69648 || | || ||| ||||||| | || ||||| || || | ||||| || ||| | Sbjct 233820 GCCGTCTACTCGCGAGTCGCCAGGGTTTGCAAGAACGACCGAGGCGGACCCTACAAC--- 233876 Query 69649 ACTCGGATAAA--TGGACGTCATTTTTAAAGACTCGACTAAATTGTTCGGTGCCCGGCGA 69706 | ||| | | ||||| || || | ||| | || || || ||||||||||||||| | Sbjct 233877 -CACGGCAAGAGCTGGACCTCTTTCCTGAAGGCCCGTCTCAACTGTTCGGTGCCCGGCAA 233935 Query 69707 ATTCCCCTTTTACTTTGACGAA 69728 ||||||||||||||||||||| Sbjct 233936 TTTCCCCTTTTACTTTGACGAA 233957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408129664886984