Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq22266 131 2e-25
seq5502 125 8e-24
seq22190 120 3e-22
seq20501 104 3e-17
>seq22266
Length=384576
Score = 131 bits (144), Expect = 2e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||||||| | || |||||| ||||| |||||||| || || ||||| | || ||
Sbjct 109174 CACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTC 109233
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||||||||||| |||| |||||||| || | || | || ||||||||||
Sbjct 109234 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 109293
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||| | || | | ||||| | ||||| |||| |||||||| ||
Sbjct 109294 GATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTT 109353
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || ||||| || || ||||||||
Sbjct 109354 GCCGGTGAGGGTTTTCACGAAAATTTGCAT 109383
>seq5502
Length=68615
Score = 125 bits (138), Expect = 8e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||| | ||||| ||||| || |||||| ||||| || || |||||
Sbjct 5820 CCTCCGCGGAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGAC 5879
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|||||||| | || || | ||||||||||||||| ||||| |||||||| || | ||
Sbjct 5880 AGAGTGCGTCCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 5939
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | |||||||||| |||||| ||| | || | | || || | ||| ||
Sbjct 5940 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGACT 5999
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| ||||||||||| || |||| || || || |||||||||||
Sbjct 6000 TCCAAGGTGATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6046
Score = 123 bits (136), Expect = 3e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||||||||| || || || | || || |||||||||||||| ||
Sbjct 6084 TCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAG 6143
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|||| |||||||| || | || | | |||||||||| |||||| ||| | ||
Sbjct 6144 ATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 6203
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||||| | ||||| || | || ||||||||||| ||||| || || ||
Sbjct 6204 TCGATCGTGTCGGATGGCTCCACCTCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACG 6263
Query 46583 AAGATTTGCAT 46593
|||||||||||
Sbjct 6264 AAGATTTGCAT 6274
Score = 122 bits (134), Expect = 1e-22
Identities = 144/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||||||||| || || || | || || |||||||||||||| ||
Sbjct 7224 TCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAG 7283
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|||| ||||||||||| | || | || |||||| ||| ||||| ||| | ||
Sbjct 7284 ATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTTACATTC 7343
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||| ||| | ||||| |||| || ||||| ||||| |||| || || |||
Sbjct 7344 TCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAGTCAATGTCTTCACA 7403
Query 46583 AAGATTTGCATTTTG 46597
||||| |||||||||
Sbjct 7404 AAGATCTGCATTTTG 7418
Score = 116 bits (128), Expect = 4e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | | |||||| |||| || | || |||||||||||| ||||| || |
Sbjct 6730 TGCCACCACGAAGACGCAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAG 6789
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| | || || |||| || || ||||||||||| || || || |||||||| || | |
Sbjct 6790 ACAACGTACGTCCGTCCTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGG 6849
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | |||||||||| |||||| ||| | || | | ||||||| | || |
Sbjct 6850 GAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGATGGCTCGA 6909
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || | || ||||||||||| ||||| || || || |||||||||||
Sbjct 6910 CCTCAAGGGTAATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||||||||| || ||||| | || || | |||||| || |||||
Sbjct 6540 TCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAA 6599
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | |||||||| || | || | | |||||| ||| ||||| ||| | |
Sbjct 6600 ATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTT 6659
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||| | ||||| || | ||||||||||| || |||| || || ||
Sbjct 6660 TCAATGGTGTCAGATGGCTCCACTTCGAGAGTGATGGTTTTTCCGGTCAAGGTCTTTACG 6719
Query 46583 AAGATTTGCAT 46593
|||||||||||
Sbjct 6720 AAGATTTGCAT 6730
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| |||||||| || || ||||| | || || | |||||| || |||||
Sbjct 6996 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCGAAA 7055
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | |||||||| || | || | | |||||| ||| ||||| ||| | |
Sbjct 7056 ATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTT 7115
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||| | ||| || |||| |||||||| || || |||| || || ||
Sbjct 7116 TCAATGGTGTCAGATGGTTCGACTTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTTACG 7175
Query 46583 AAGATTTGCAT 46593
|||||||||||
Sbjct 7176 AAGATTTGCAT 7186
>seq22190
Length=927835
Score = 120 bits (132), Expect = 3e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| || | ||| |||||| ||||| ||||||||||| | ||||| | || ||
Sbjct 837279 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTC 837220
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||| || |||||||| ||||| ||||||||||| | || | | ||||||||||
Sbjct 837219 CAGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTG 837160
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||| | || | | || ||| | || || |||| |||||||| ||
Sbjct 837159 GATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTT 837100
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
||| |||| || || ||||| |||||||| |||
Sbjct 837099 GCCGGTCAAAGTCTTCACAAAAATTTGCATGTTG 837066
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| |||| |||||| || |||||| ||||| ||||||||||| | ||||| |
Sbjct 837740 ACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCC 837681
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || | ||||||||| || || ||||| ||||||||||| | || | || |||||
Sbjct 837680 GTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTT 837621
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| ||| || ||| | || | | || ||| | || || || | |||||
Sbjct 837620 GTCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGAT 837561
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| || || || || |||||||| |||||
Sbjct 837560 GGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837525
Score = 107 bits (118), Expect = 2e-18
Identities = 162/229 (71%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | | ||| | ||||| || | ||| |||||| ||||| ||||||||||
Sbjct 837525 TGCCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 837466
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| | ||||| |||| || | ||||||||| || || ||||| ||||||||||| | |
Sbjct 837465 ACAAGGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGG 837406
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || ||||||||| ||| || ||| | || | | || ||| | || |
Sbjct 837405 GAATGCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGA 837346
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| | || |||||||| ||||| || || || || |||||||| |||||
Sbjct 837345 CCT-CAAGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 837298
>seq20501
Length=31302
Score = 104 bits (114), Expect = 3e-17
Identities = 155/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| ||||| || |||||| || || || ||||| || || || || |
Sbjct 11128 ACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCC 11187
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||| ||||| |||| |||||||| || | || | | || ||
Sbjct 11188 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTT 11247
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| ||||| |||| | | | ||||| || ||| || || | |||||
Sbjct 11248 GTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGAT 11307
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
||| |||||||| || || ||||| ||||| ||||| |||
Sbjct 11308 GGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 11347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565077172811880
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