Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq20501 98.7 4e-15 seq5502 93.3 2e-13 >seq20501 Length=31302 Score = 98.7 bits (108), Expect = 4e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || || || || || || |||||||| || ||| | || Sbjct 11343 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 11284 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | ||| || ||||| || || |||||||||||||| ||||| Sbjct 11283 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 11224 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || |||||||| | || | | || ||||| Sbjct 11223 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAAC 11164 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || | ||||| || Sbjct 11163 ATTCAGAAGGAGTCCACTTTGCACTTGGT 11135 >seq5502 Length=68615 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| ||||| ||||| ||||| || || |||| Sbjct 6274 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATTACCCTTGAGGTGGAGCCATCC 6215 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | | || || || || || ||||| || ||||| || ||||| Sbjct 6214 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 6155 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || |||||||||||| |||| | | || || || Sbjct 6154 CAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCCGACTACAAC 6095 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 6094 ATCCAGAAGGAATCCACCCTTCACTTGGT 6066 Score = 86.0 bits (94), Expect = 2e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || ||| ||||||| || || |||||| | || || || | || Sbjct 7415 AATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATTACTTTGGAGGTGGAGCCTTC 7356 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || || | | || || ||||| |||||||| || ||||| || || || Sbjct 7355 CGATACGATCGAGAATGTAAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCA 7296 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || || | || || || |||||||||||| |||| | | || || || Sbjct 7295 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTTTCCGACTACAA 7236 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 7235 CATCCAGAAGGAATCCACCCTTCACTTGGT 7206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975140762298452