Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq22344 107 1e-17 seq21827 93.3 3e-13 >seq22344 Length=193125 Score = 107 bits (118), Expect = 1e-17 Identities = 447/703 (64%), Gaps = 2/703 (0%) Strand=Plus/Plus Query 518012 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 518071 || || ||||| || || || || ||||| |||| | || | ||| | ||||| | Sbjct 188424 GTGACCAGACGGTTGTCGAAGTCCTCACCACCCAGATGCGTGTCTCCGGCCGTAGACTTG 188483 Query 518072 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131 || | ||| | || || || | |||| | | ||||| ||| || || || | | Sbjct 188484 ACCTCGAAGATGCCGTCATCGATCGACAGGATGGACACATCGAAGGTGCCGCCGCCTAGA 188543 Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 518191 || || || || || || ||| | || || || ||||| || || | ||| Sbjct 188544 TCGAAGATGAGCACGTTGCGCTCTCCAACGGCCTTCTTGTCCAGACCGTAGGCGATAGCC 188603 Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251 || ||||| || || || || || | || || || |||||||| || | || || || Sbjct 188604 GCGGCAGTGGGCTCGTTGATGATACGCAGCACGTTCAGACCAGCGATGGTGCCGGCGTCC 188663 Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT 518311 || || || || | || || |||||||| || || || || || || || || | || Sbjct 188664 TTGGTCGCCTGACGCTGAGAGTCGTTAAAGTAGGCCGGCACGGTGATGACAGCGTTGGTC 188723 Query 518312 ACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAA 518371 || || || | ||| || || || | ||||| || | | | ||| || || Sbjct 188724 ACAGTCTTGCCCAGATAGGCCTCGGCAGTCTCCTTCATCTTGGTGAGCACCATCGAGGAG 188783 Query 518372 ATTTGTTCTGGGGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 518430 || | || |||||| | | ||| || | | || | || || | | || || Sbjct 188784 ATCTCCTC-GGGGAAGAAGGTCTTCTTCTCGTCCTTGTAGGTCACCTCGATCTTGGGCTT 188842 Query 518431 ATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTC 518490 || | | | || | || ||||||| ||||| || || || ||| ||| Sbjct 188843 GCCGTCAGCGCTGACCACCTCGAAGGGCCAGTGCTTCATGTCGGACTGCACAGCGGAGTC 188902 Query 518491 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGC 518550 | ||| | | |||||| | || || ||||| || || || | ||| || || || || Sbjct 188903 TTCAAACTTGCGACCAATCAGACGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATCGC 188962 Query 518551 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 518610 | || | ||||| || || || |||||| | || || || || || | |||||| || Sbjct 188963 CACCTGGTTCTTGGCGGCGTCACCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGA 189022 Query 518611 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 518670 |||||| || |||||||| || || || || || || || || || |||| || | || Sbjct 189023 TGGAGTGGTACGATTACCCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACAC 189082 Query 518671 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 || || || | || || || ||||||||||||| |||| Sbjct 189083 GCCCACGCACGAGTAGGTGGTGCCCAAATCAATACCAACAGCA 189125 >seq21827 Length=194424 Score = 93.3 bits (102), Expect = 3e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 870803 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 870862 ||||| | || || || || || || ||| |||||||| |||| ||||| |||| || Sbjct 172183 GTCGACTTCTCCTCGCCCAACATCGCCAAACAAATGCATGTTGGTCATTTGCGATCCACA 172242 Query 870863 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 870922 |||||||| ||||| | ||| || | ||||| | | ||||| || ||| | Sbjct 172243 ATTATTGGCGAATCGGTATGTCGGCTTCTAGAATTTCTTCAGCACGACGTGATCCGTGTC 172302 Query 870923 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966 |||||| | |||||||||||||| || || || ||| ||||||| Sbjct 172303 AATCATCTTGGTGATTGGGGAACACAGTTTGGCATGCTAATTGC 172346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779690046054214