Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq22344 107 1e-17
seq21827 93.3 3e-13
>seq22344
Length=193125
Score = 107 bits (118), Expect = 1e-17
Identities = 447/703 (64%), Gaps = 2/703 (0%)
Strand=Plus/Plus
Query 518012 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 518071
|| || ||||| || || || || ||||| |||| | || | ||| | ||||| |
Sbjct 188424 GTGACCAGACGGTTGTCGAAGTCCTCACCACCCAGATGCGTGTCTCCGGCCGTAGACTTG 188483
Query 518072 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131
|| | ||| | || || || | |||| | | ||||| ||| || || || | |
Sbjct 188484 ACCTCGAAGATGCCGTCATCGATCGACAGGATGGACACATCGAAGGTGCCGCCGCCTAGA 188543
Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 518191
|| || || || || || ||| | || || || ||||| || || | |||
Sbjct 188544 TCGAAGATGAGCACGTTGCGCTCTCCAACGGCCTTCTTGTCCAGACCGTAGGCGATAGCC 188603
Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251
|| ||||| || || || || || | || || || |||||||| || | || || ||
Sbjct 188604 GCGGCAGTGGGCTCGTTGATGATACGCAGCACGTTCAGACCAGCGATGGTGCCGGCGTCC 188663
Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT 518311
|| || || || | || || |||||||| || || || || || || || || | ||
Sbjct 188664 TTGGTCGCCTGACGCTGAGAGTCGTTAAAGTAGGCCGGCACGGTGATGACAGCGTTGGTC 188723
Query 518312 ACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAA 518371
|| || || | ||| || || || | ||||| || | | | ||| || ||
Sbjct 188724 ACAGTCTTGCCCAGATAGGCCTCGGCAGTCTCCTTCATCTTGGTGAGCACCATCGAGGAG 188783
Query 518372 ATTTGTTCTGGGGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 518430
|| | || |||||| | | ||| || | | || | || || | | || ||
Sbjct 188784 ATCTCCTC-GGGGAAGAAGGTCTTCTTCTCGTCCTTGTAGGTCACCTCGATCTTGGGCTT 188842
Query 518431 ATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTC 518490
|| | | | || | || ||||||| ||||| || || || ||| |||
Sbjct 188843 GCCGTCAGCGCTGACCACCTCGAAGGGCCAGTGCTTCATGTCGGACTGCACAGCGGAGTC 188902
Query 518491 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGC 518550
| ||| | | |||||| | || || ||||| || || || | ||| || || || ||
Sbjct 188903 TTCAAACTTGCGACCAATCAGACGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATCGC 188962
Query 518551 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 518610
| || | ||||| || || || |||||| | || || || || || | |||||| ||
Sbjct 188963 CACCTGGTTCTTGGCGGCGTCACCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGA 189022
Query 518611 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 518670
|||||| || |||||||| || || || || || || || || || |||| || | ||
Sbjct 189023 TGGAGTGGTACGATTACCCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACAC 189082
Query 518671 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713
|| || || | || || || ||||||||||||| ||||
Sbjct 189083 GCCCACGCACGAGTAGGTGGTGCCCAAATCAATACCAACAGCA 189125
>seq21827
Length=194424
Score = 93.3 bits (102), Expect = 3e-13
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 870803 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 870862
||||| | || || || || || || ||| |||||||| |||| ||||| |||| ||
Sbjct 172183 GTCGACTTCTCCTCGCCCAACATCGCCAAACAAATGCATGTTGGTCATTTGCGATCCACA 172242
Query 870863 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 870922
|||||||| ||||| | ||| || | ||||| | | ||||| || ||| |
Sbjct 172243 ATTATTGGCGAATCGGTATGTCGGCTTCTAGAATTTCTTCAGCACGACGTGATCCGTGTC 172302
Query 870923 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966
|||||| | |||||||||||||| || || || ||| |||||||
Sbjct 172303 AATCATCTTGGTGATTGGGGAACACAGTTTGGCATGCTAATTGC 172346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3779690046054214
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |