Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq20124 95.1 2e-14 >seq20124 Length=133112 Score = 95.1 bits (104), Expect = 2e-14 Identities = 170/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 176020 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 176079 ||| || |||||| | | ||| ||||| |||||||| | || || || |||||||| || Sbjct 43836 ATCTTTGCCACCCGTCAAACGAGTACCGAACTGACCGCGTGGTTCCAGCAGATTGATGTT 43895 Query 176080 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCAC 176138 ||||| |||| ||| | || | || ||||| || || || | ||||| || | Sbjct 43896 GTTTGCGCCCACAAAGTTCTGGGCGAGATTCACAATGGTCATCTGCAAC-GAGACCTCGC 43954 Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 176198 |||||||||| || | |||| || || || | | | ||| || || |||| ||| Sbjct 43955 CGTGGTGGTAGGCGGACATCTCGGCCACCGATCCGGATAGCTGGGCGACCTTCACCTCGC 44014 Query 176199 CCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 176258 |||| ||| | | ||| || | | |||| |||||||| || ||||| || |||| Sbjct 44015 GCTTGTCGTTCCTCTTGAAGCAGGTGAACATTACCTTGCGCTGACCCGGCTTAAGTCCAT 44074 Query 176259 CCGCCA 176264 || ||| Sbjct 44075 CCACCA 44080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620565340989680