Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq8501 147 3e-30
seq1813 147 3e-30
seq8502 145 9e-30
seq22080 125 8e-24
>seq8501
Length=20033
Score = 147 bits (162), Expect = 3e-30
Identities = 493/763 (65%), Gaps = 11/763 (1%)
Strand=Plus/Minus
Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151
||||| || | || || | |||||||||||||| || | ||| ||||| ||| ||
Sbjct 2078 AGAATCAAGGCGTCAGCGAAACCCTGAACACCGATGCCCACGGGACGATGTCTCAAATTG 2019
Query 110152 GAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211
|| || | | ||| ||||||||| || || | | |||||||| ||
Sbjct 2018 GATTTCTTTGCCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGTTGAGATTTTTG 1959
Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271
|| || ||||| || | ||| | ||||| | | |||| || ||||| || ||
Sbjct 1958 GTAACCGTCTTGGTAACTTCCTTAAGTTTCTGGAAATCAAATTTTTTC---TCGGGTGTG 1902
Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331
||| | || ||||| || || || || |||||||| | | |||| || ||
Sbjct 1901 ACAAACATGTTAAGAGCGATGGATGCCAGGTTGCACACTGCAATCTCATCCGGCGAGGAA 1842
Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391
||||| | ||||| || ||||||||| | ||||||| || | ||||| ||| ||
Sbjct 1841 TATTCAACGATTTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTG 1782
Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451
||| |||||| |||||||| ||||||| || ||| | ||||||||| ||| |||
Sbjct 1781 CTTTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGGTTGCCAGTTTCCACCTGCGAC 1722
Query 110452 TTGAGAATGGCCTTCCATACATCGGCGGCGGG--GACAGTTGCGTTAGCGAGACCTTCCT 110509
| | |||||| ||| || | | | | ||| ||| ||| || |||| || |
Sbjct 1721 TCAATAATGGCAAACCA--CAAGGACTGAGCCTTGACCGTTCGGTTCGCACGACCCTCTT 1664
Query 110510 CCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCG 110569
|||||| || ||||||| | ||| ||||| | || | ||||| || |||
Sbjct 1663 GCTCGTATTTAGTGTACAGCTTCTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGC 1604
Query 110570 CCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGT 110629
|||| || || | || |||||||| || |||| || | |||||||| || |
Sbjct 1603 ATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGAT 1544
Query 110630 CAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGA 110689
| || ||||| | || | || || || ||| ||| ||| || | || |||
Sbjct 1543 CGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTGTTTT 1484
Query 110690 GGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGG 110749
| || |||| ||| || | || |||||||||||| || || || || | || | ||
Sbjct 1483 TCTG-AGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGG 1425
Query 110750 ATCCCTTACGA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806
|| ||| | || |||| | ||||||||||| ||||||||||| |
Sbjct 1424 CACCGGGACGCTTGCCGCCACCCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCA 1365
Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849
|||| |||| | |||| ||| ||||| || || | |||
Sbjct 1364 GCATGGGAACTAGGCCATTGGAAGTGCCATTCGTGCCGCAAAT 1322
>seq1813
Length=4749
Score = 147 bits (162), Expect = 3e-30
Identities = 534/830 (64%), Gaps = 12/830 (1%)
Strand=Plus/Plus
Query 110026 TACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGA 110085
|| || || ||||| || || ||||| || | | |||||||| || | || | |
Sbjct 1809 TAAATCGTTTCAAATATCTGCTGATTCAAAAGACCGGCCTCTTCACTTTCATATGGGA-A 1867
Query 110086 CCACAA-AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144
| || ||||| || | || || | |||||||||||||| || | ||| ||||| |
Sbjct 1868 TCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACACCGATGCCCACGGGACGATGTCT 1927
Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204
|| || || || | | ||| ||||||||| || || | | |||||
Sbjct 1928 CAAATTGGATTTCTTTGCCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGTTGAG 1987
Query 110205 ATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTC 110264
||| || || || ||||| || | ||| | ||||| | | |||| || ||||| ||
Sbjct 1988 ATTTTTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTGGAAATCAAATTTTTTC---TC 2044
Query 110265 CTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTT 110324
||||| | || ||||| || || || || |||||||| | | |||| ||
Sbjct 2045 GGGTGTGACAAACATGTTAAGAGCGATGGATGCCAGGTTGCACACTGCAATCTCATCCGG 2104
Query 110325 GTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTT 110384
|| ||||| | ||||| || ||||||||| | ||||||| || | |||||
Sbjct 2105 CGAGGAATATTCAACGATTTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAACGTTCTG 2164
Query 110385 CTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGT 110444
||| || ||| |||||| |||||||| ||||||| || ||| | |||||||||
Sbjct 2165 CTGGTTGCTTTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGGTTGCCAGTTTCCAC 2224
Query 110445 CTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGG--GACAGTTGCGTTAGCGAGA 110502
||| |||| | |||||| ||| || | | | | ||| ||| ||| || ||
Sbjct 2225 CTGCGACTCAATAATGGCAAACCA--CAAGGACTGAGCCTTGACCGTTCGGTTCGCACGA 2282
Query 110503 CCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGA 110562
|| || | |||||| || ||||||| | ||| ||||| | || | ||||| ||
Sbjct 2283 CCCTCTTGCTCGTATTTAGTGTACAGCTTCTCGAATTCATCGCCCCAGACATCGTGCAGG 2342
Query 110563 CCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATG 110622
||| |||| || || | || |||||||| || |||| || | ||||||
Sbjct 2343 CCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACGCGTTTCATG 2402
Query 110623 AACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCT 110682
|| || || || ||||| | || | || || || ||| ||| ||| || | ||
Sbjct 2403 AAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCCTCCTTGCCA 2462
Query 110683 TGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACA 110742
||| || |||| ||| || | || |||||||||||| || || || || |
Sbjct 2463 GTGTTTTTCTTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATG 2522
Query 110743 GCGATGGATCCCTTACGA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAG 110799
|| | || || ||| | || |||| | ||||||||||| ||||||
Sbjct 2523 GCAAAGGCACCGGGACGCTTGCCGCCACCCTGATCCACATAGCGTGCCACATTGTTGAAG 2582
Query 110800 ACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849
||||| ||||| |||| | |||| ||| ||||| || || | |||
Sbjct 2583 ACCCTCAGCATGGGAACTAGGCCATTGGAAGTGCCATTCGTGCCGCAAAT 2632
>seq8502
Length=4749
Score = 145 bits (160), Expect = 9e-30
Identities = 492/763 (64%), Gaps = 10/763 (1%)
Strand=Plus/Plus
Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151
||||| || | || || | |||||||||||||| || | ||| ||||| ||| ||
Sbjct 1876 AGAATCAAGGCGTCAGCGAAACCCTGAACACCGATGCCCACGGGACGATGTCTCAAATTG 1935
Query 110152 GAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211
|| || | | ||| ||||||||| || || | | |||||||| ||
Sbjct 1936 GATTTCTTTGCCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGTTGAGATTTTTG 1995
Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271
|| || ||||| || | ||| | ||||| | | |||| || ||||| || ||
Sbjct 1996 GTAACCGTCTTGGTAACTTCCTTAAGTTTCTGGAAATCAAATTTTTTC---TCGGGTGTG 2052
Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331
||| | || ||||| || || || || |||||||| | | |||| || ||
Sbjct 2053 ACAAACATGTTAAGAGCGATGGATGCCAGGTTGCACACTGCAATCTCATCCGGCGAGGAA 2112
Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391
||||| | ||||| || ||||||||| | ||||||| || | ||||| ||| ||
Sbjct 2113 TATTCAACGATTTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTG 2172
Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451
||| |||||| |||||||| ||||||| || ||| | ||||||||| ||| |||
Sbjct 2173 CTTTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGGTTGCCAGTTTCCACCTGCGAC 2232
Query 110452 TTGAGAATGGCCTTCCATACATCGGCGGCGGG--GACAGTTGCGTTAGCGAGACCTTCCT 110509
| | |||||| ||| || | | | | ||| ||| ||| || |||| || |
Sbjct 2233 TCAATAATGGCAAACCA--CAAGGACTGAGCCTTGACCGTTCGGTTCGCACGACCCTCTT 2290
Query 110510 CCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCG 110569
|||||| || ||||||| | ||| ||||| | || | ||||| || |||
Sbjct 2291 GCTCGTATTTAGTGTACAGCTTCTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGC 2350
Query 110570 CCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGT 110629
|||| || || | || |||||||| || |||| || | |||||||| || |
Sbjct 2351 ATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGAT 2410
Query 110630 CAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGA 110689
| || ||||| | || | || || || ||| ||| ||| || | || |||
Sbjct 2411 CGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTGTTTT 2470
Query 110690 GGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGG 110749
|| |||| ||| || | || |||||||||||| || || || || | || | ||
Sbjct 2471 TCTTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGG 2530
Query 110750 ATCCCTTACGA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806
|| ||| | || |||| | ||||||||||| ||||||||||| |
Sbjct 2531 CACCGGGACGCTTGCCGCCACCCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCA 2590
Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849
|||| |||| | |||| ||| ||||| || || | |||
Sbjct 2591 GCATGGGAACTAGGCCATTGGAAGTGCCATTCGTGCCGCAAAT 2633
>seq22080
Length=207503
Score = 125 bits (138), Expect = 8e-24
Identities = 313/467 (67%), Gaps = 20/467 (4%)
Strand=Plus/Plus
Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555
||||| |||||| |||||||| || || | ||||| | || |||||||| ||||| ||
Sbjct 197372 AATCTGACGATCAAAACGACCCGGTCGCATGAGAGCCTTGTCCAGAATATCCACACGATT 197431
Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAG 11612
|| || || | || || | || || || | ||| |||||||| || ||
Sbjct 197432 GGTGGCTGCCAGCACCACCA---CATTCGTTGTGGTATTGAAGCCGTCCATCTCAACCAG 197488
Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGA-ACGCT 11671
||| ||||||| || | || |||| || | | | || | |||| |||||
Sbjct 197489 AAGTTGGTTGAGGGTATTCTCCTGCTCCGAGT-GACCGCCGAACGTCTTGCCACCACGCT 197547
Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGG---TTGGTTGGCACGTG 11728
|| |||| ||||||||||||||||||||||| | ||| || || || ||| || |
Sbjct 197548 TCCTACCCACAGCGTCAATCTCATCGATGAAAAGGATGCAGGGAGCGTGCTTG---CGGG 197604
Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788
|| |||| | ||||| || ||| | ||||| || |||||||| || | ||| |
Sbjct 197605 CCATGGCGAACATGTCACGCACTCGCGATGGACCAACGCCCACGAACATTTCGAGGAACT 197664
Query 11789 TTGCGG--CAGAACACTG-AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845
||| | | |||| | |||||||| ||||| | ||| || ||| |||| || |
Sbjct 197665 ---CGGATCCGGACACGGTGATGAAGGGCACATTCGCCTCGCCGGCGGTGGCCTTGGCCA 197721
Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905
|||| || |||||||| || |||| || | || | ||| || || |||||||| |
Sbjct 197722 GGAGCGTTTTACCCGTGCCGGGTGGGCCCGTTAGCATGGCCCCCTTTGGTATCTTGGCGC 197781
Query 11906 CACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952
| | | ||| ||| || ||||| ||||||| || | ||||
Sbjct 197782 CCAGATCGATGTACTGCTGCGGGTTCTTCAGGAAGTTAACGAACTCC 197828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588808001958200
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