Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8501 147 3e-30 seq1813 147 3e-30 seq8502 145 9e-30 seq22080 125 8e-24 >seq8501 Length=20033 Score = 147 bits (162), Expect = 3e-30 Identities = 493/763 (65%), Gaps = 11/763 (1%) Strand=Plus/Minus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 ||||| || | || || | |||||||||||||| || | ||| ||||| ||| || Sbjct 2078 AGAATCAAGGCGTCAGCGAAACCCTGAACACCGATGCCCACGGGACGATGTCTCAAATTG 2019 Query 110152 GAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211 || || | | ||| ||||||||| || || | | |||||||| || Sbjct 2018 GATTTCTTTGCCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGTTGAGATTTTTG 1959 Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271 || || ||||| || | ||| | ||||| | | |||| || ||||| || || Sbjct 1958 GTAACCGTCTTGGTAACTTCCTTAAGTTTCTGGAAATCAAATTTTTTC---TCGGGTGTG 1902 Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331 ||| | || ||||| || || || || |||||||| | | |||| || || Sbjct 1901 ACAAACATGTTAAGAGCGATGGATGCCAGGTTGCACACTGCAATCTCATCCGGCGAGGAA 1842 Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391 ||||| | ||||| || ||||||||| | ||||||| || | ||||| ||| || Sbjct 1841 TATTCAACGATTTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTG 1782 Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451 ||| |||||| |||||||| ||||||| || ||| | ||||||||| ||| ||| Sbjct 1781 CTTTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGGTTGCCAGTTTCCACCTGCGAC 1722 Query 110452 TTGAGAATGGCCTTCCATACATCGGCGGCGGG--GACAGTTGCGTTAGCGAGACCTTCCT 110509 | | |||||| ||| || | | | | ||| ||| ||| || |||| || | Sbjct 1721 TCAATAATGGCAAACCA--CAAGGACTGAGCCTTGACCGTTCGGTTCGCACGACCCTCTT 1664 Query 110510 CCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCG 110569 |||||| || ||||||| | ||| ||||| | || | ||||| || ||| Sbjct 1663 GCTCGTATTTAGTGTACAGCTTCTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGC 1604 Query 110570 CCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGT 110629 |||| || || | || |||||||| || |||| || | |||||||| || | Sbjct 1603 ATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGAT 1544 Query 110630 CAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGA 110689 | || ||||| | || | || || || ||| ||| ||| || | || ||| Sbjct 1543 CGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTGTTTT 1484 Query 110690 GGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGG 110749 | || |||| ||| || | || |||||||||||| || || || || | || | || Sbjct 1483 TCTG-AGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGG 1425 Query 110750 ATCCCTTACGA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806 || ||| | || |||| | ||||||||||| ||||||||||| | Sbjct 1424 CACCGGGACGCTTGCCGCCACCCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCA 1365 Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849 |||| |||| | |||| ||| ||||| || || | ||| Sbjct 1364 GCATGGGAACTAGGCCATTGGAAGTGCCATTCGTGCCGCAAAT 1322 >seq1813 Length=4749 Score = 147 bits (162), Expect = 3e-30 Identities = 534/830 (64%), Gaps = 12/830 (1%) Strand=Plus/Plus Query 110026 TACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGA 110085 || || || ||||| || || ||||| || | | |||||||| || | || | | Sbjct 1809 TAAATCGTTTCAAATATCTGCTGATTCAAAAGACCGGCCTCTTCACTTTCATATGGGA-A 1867 Query 110086 CCACAA-AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144 | || ||||| || | || || | |||||||||||||| || | ||| ||||| | Sbjct 1868 TCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACACCGATGCCCACGGGACGATGTCT 1927 Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204 || || || || | | ||| ||||||||| || || | | ||||| Sbjct 1928 CAAATTGGATTTCTTTGCCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGTTGAG 1987 Query 110205 ATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTC 110264 ||| || || || ||||| || | ||| | ||||| | | |||| || ||||| || Sbjct 1988 ATTTTTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTGGAAATCAAATTTTTTC---TC 2044 Query 110265 CTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTT 110324 ||||| | || ||||| || || || || |||||||| | | |||| || Sbjct 2045 GGGTGTGACAAACATGTTAAGAGCGATGGATGCCAGGTTGCACACTGCAATCTCATCCGG 2104 Query 110325 GTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTT 110384 || ||||| | ||||| || ||||||||| | ||||||| || | ||||| Sbjct 2105 CGAGGAATATTCAACGATTTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAACGTTCTG 2164 Query 110385 CTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGT 110444 ||| || ||| |||||| |||||||| ||||||| || ||| | ||||||||| Sbjct 2165 CTGGTTGCTTTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGGTTGCCAGTTTCCAC 2224 Query 110445 CTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGG--GACAGTTGCGTTAGCGAGA 110502 ||| |||| | |||||| ||| || | | | | ||| ||| ||| || || Sbjct 2225 CTGCGACTCAATAATGGCAAACCA--CAAGGACTGAGCCTTGACCGTTCGGTTCGCACGA 2282 Query 110503 CCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGA 110562 || || | |||||| || ||||||| | ||| ||||| | || | ||||| || Sbjct 2283 CCCTCTTGCTCGTATTTAGTGTACAGCTTCTCGAATTCATCGCCCCAGACATCGTGCAGG 2342 Query 110563 CCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATG 110622 ||| |||| || || | || |||||||| || |||| || | |||||| Sbjct 2343 CCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACGCGTTTCATG 2402 Query 110623 AACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCT 110682 || || || || ||||| | || | || || || ||| ||| ||| || | || Sbjct 2403 AAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCCTCCTTGCCA 2462 Query 110683 TGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACA 110742 ||| || |||| ||| || | || |||||||||||| || || || || | Sbjct 2463 GTGTTTTTCTTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATG 2522 Query 110743 GCGATGGATCCCTTACGA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAG 110799 || | || || ||| | || |||| | ||||||||||| |||||| Sbjct 2523 GCAAAGGCACCGGGACGCTTGCCGCCACCCTGATCCACATAGCGTGCCACATTGTTGAAG 2582 Query 110800 ACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849 ||||| ||||| |||| | |||| ||| ||||| || || | ||| Sbjct 2583 ACCCTCAGCATGGGAACTAGGCCATTGGAAGTGCCATTCGTGCCGCAAAT 2632 >seq8502 Length=4749 Score = 145 bits (160), Expect = 9e-30 Identities = 492/763 (64%), Gaps = 10/763 (1%) Strand=Plus/Plus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 ||||| || | || || | |||||||||||||| || | ||| ||||| ||| || Sbjct 1876 AGAATCAAGGCGTCAGCGAAACCCTGAACACCGATGCCCACGGGACGATGTCTCAAATTG 1935 Query 110152 GAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211 || || | | ||| ||||||||| || || | | |||||||| || Sbjct 1936 GATTTCTTTGCCTCTGGGAGGGGATAAAAGTTGATATCAATTATCTTGTTGAGATTTTTG 1995 Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271 || || ||||| || | ||| | ||||| | | |||| || ||||| || || Sbjct 1996 GTAACCGTCTTGGTAACTTCCTTAAGTTTCTGGAAATCAAATTTTTTC---TCGGGTGTG 2052 Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331 ||| | || ||||| || || || || |||||||| | | |||| || || Sbjct 2053 ACAAACATGTTAAGAGCGATGGATGCCAGGTTGCACACTGCAATCTCATCCGGCGAGGAA 2112 Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391 ||||| | ||||| || ||||||||| | ||||||| || | ||||| ||| || Sbjct 2113 TATTCAACGATTTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAACGTTCTGCTGGTTG 2172 Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451 ||| |||||| |||||||| ||||||| || ||| | ||||||||| ||| ||| Sbjct 2173 CTTTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGGTTGCCAGTTTCCACCTGCGAC 2232 Query 110452 TTGAGAATGGCCTTCCATACATCGGCGGCGGG--GACAGTTGCGTTAGCGAGACCTTCCT 110509 | | |||||| ||| || | | | | ||| ||| ||| || |||| || | Sbjct 2233 TCAATAATGGCAAACCA--CAAGGACTGAGCCTTGACCGTTCGGTTCGCACGACCCTCTT 2290 Query 110510 CCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCG 110569 |||||| || ||||||| | ||| ||||| | || | ||||| || ||| Sbjct 2291 GCTCGTATTTAGTGTACAGCTTCTCGAATTCATCGCCCCAGACATCGTGCAGGCCCGGGC 2350 Query 110570 CCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGT 110629 |||| || || | || |||||||| || |||| || | |||||||| || | Sbjct 2351 ATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGACGCGTTTCATGAAGAGAT 2410 Query 110630 CAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGA 110689 | || ||||| | || | || || || ||| ||| ||| || | || ||| Sbjct 2411 CGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCTCCTCCTTGCCAGTGTTTT 2470 Query 110690 GGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGG 110749 || |||| ||| || | || |||||||||||| || || || || | || | || Sbjct 2471 TCTTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGG 2530 Query 110750 ATCCCTTACGA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806 || ||| | || |||| | ||||||||||| ||||||||||| | Sbjct 2531 CACCGGGACGCTTGCCGCCACCCTGATCCACATAGCGTGCCACATTGTTGAAGACCCTCA 2590 Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849 |||| |||| | |||| ||| ||||| || || | ||| Sbjct 2591 GCATGGGAACTAGGCCATTGGAAGTGCCATTCGTGCCGCAAAT 2633 >seq22080 Length=207503 Score = 125 bits (138), Expect = 8e-24 Identities = 313/467 (67%), Gaps = 20/467 (4%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||||| |||||| |||||||| || || | ||||| | || |||||||| ||||| || Sbjct 197372 AATCTGACGATCAAAACGACCCGGTCGCATGAGAGCCTTGTCCAGAATATCCACACGATT 197431 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAG 11612 || || || | || || | || || || | ||| |||||||| || || Sbjct 197432 GGTGGCTGCCAGCACCACCA---CATTCGTTGTGGTATTGAAGCCGTCCATCTCAACCAG 197488 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGA-ACGCT 11671 ||| ||||||| || | || |||| || | | | || | |||| ||||| Sbjct 197489 AAGTTGGTTGAGGGTATTCTCCTGCTCCGAGT-GACCGCCGAACGTCTTGCCACCACGCT 197547 Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGG---TTGGTTGGCACGTG 11728 || |||| ||||||||||||||||||||||| | ||| || || || ||| || | Sbjct 197548 TCCTACCCACAGCGTCAATCTCATCGATGAAAAGGATGCAGGGAGCGTGCTTG---CGGG 197604 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 || |||| | ||||| || ||| | ||||| || |||||||| || | ||| | Sbjct 197605 CCATGGCGAACATGTCACGCACTCGCGATGGACCAACGCCCACGAACATTTCGAGGAACT 197664 Query 11789 TTGCGG--CAGAACACTG-AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845 ||| | | |||| | |||||||| ||||| | ||| || ||| |||| || | Sbjct 197665 ---CGGATCCGGACACGGTGATGAAGGGCACATTCGCCTCGCCGGCGGTGGCCTTGGCCA 197721 Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905 |||| || |||||||| || |||| || | || | ||| || || |||||||| | Sbjct 197722 GGAGCGTTTTACCCGTGCCGGGTGGGCCCGTTAGCATGGCCCCCTTTGGTATCTTGGCGC 197781 Query 11906 CACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 | | | ||| ||| || ||||| ||||||| || | |||| Sbjct 197782 CCAGATCGATGTACTGCTGCGGGTTCTTCAGGAAGTTAACGAACTCC 197828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588808001958200