Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq5502 143 6e-29
seq22266 134 3e-26
seq20501 134 3e-26
seq22190 129 1e-24
>seq5502
Length=68615
Score = 143 bits (158), Expect = 6e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| | ||||||||| || || || || ||||||| ||||| | |||||||| | |||
Sbjct 5843 GTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTGCGTCCATCTTCCAACTG 5902
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| | || || || ||||| ||||| || || ||||| || || ||
Sbjct 5903 CTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTT 5962
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| |||||||||||||| || || ||| ||||| | ||| | || ||||| ||
Sbjct 5963 GGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGACTTCCAAGGTGATGGTTTTTCCGGT 6022
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
||| || |||||||| | ||||||
Sbjct 6023 CAAGGTCTTTACGAAGATTTGCAT 6046
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||||| | ||| | |||||| ||||| || || || || ||||| |||| ||| || |
Sbjct 6512 GAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCG 6571
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|||||||| | |||||| || ||||| || || || || || ||||| ||||| || ||
Sbjct 6572 GCCATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTC 6631
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
|| || ||||| || ||| || || ||||||||||| || |||||||| || ||
Sbjct 6632 CTTATCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGAGT 6691
Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || ||||| ||||| || |||||||| | ||||||
Sbjct 6692 GATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730
Score = 140 bits (154), Expect = 7e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | |||||| ||||| || || || || ||||| || | ||| || | ||||||||
Sbjct 6977 AACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTC 7036
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
| |||||| || ||||| || || || || || ||||| ||||| || || || || ||
Sbjct 7037 CAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTG 7096
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| || || ||||||||||| || ||| ||||| | ||| | |||||
Sbjct 7097 AATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCGACTTCCAAGGTGATGGTCTT 7156
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| ||||| || |||||||| | ||||||
Sbjct 7157 TCCGGTCAAGGTCTTTACGAAGATTTGCAT 7186
Score = 125 bits (138), Expect = 2e-23
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||||| | ||| | |||||| ||||| || || || || ||||| || | ||| || |
Sbjct 6284 GAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCG 6343
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|||||||| | ||||| || ||||| || || ||||| || ||||| || ||||| ||
Sbjct 6344 GCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATGCCCTC 6403
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
||||| || || || ||| || || ||||||||||| || || || || || ||
Sbjct 6404 CTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAACCTCCAGCGT 6463
Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || |||| || |||||||| | |||||
Sbjct 6464 AATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 6502
>seq22266
Length=384576
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || ||||| || ||||| || || || ||||| || | || || | ||||| ||
Sbjct 109175 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCC 109234
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || || ||||| |||||||| || ||||| ||
Sbjct 109235 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 109294
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || ||||| |||||||||||| ||||| || | ||| | |||||
Sbjct 109295 ATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTG 109354
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||||| ||||| | ||||||
Sbjct 109355 CCGGTGAGGGTTTTCACGAAAATTTGCAT 109383
>seq20501
Length=31302
Score = 134 bits (148), Expect = 3e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| | ||||||||| || ||||| || || || | || || | |||||||| |||||
Sbjct 11140 GTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATCTTCCAGCTG 11199
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| || || || || ||||||||||| ||||||||||| ||||| ||
Sbjct 11200 CTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTT 11259
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||| || || || |||||||| ||| || ||||| || | ||||| || ||
Sbjct 11260 GGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGT 11319
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | |||||
Sbjct 11320 GAGGGTCTTAACGAAGATCTGCAT 11343
>seq22190
Length=927835
Score = 129 bits (142), Expect = 1e-24
Identities = 153/205 (75%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995
||| || || ||||| || || || ||||| |||| |||| || | |||||||| ||||
Sbjct 837273 GTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCATCTTCCAGCT 837215
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
| || || |||||||| | ||| || |||||||| ||||| || || ||||| || || |
Sbjct 837214 GTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCT 837155
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115
| ||| |||||||||||||| || ||| || || || | || | ||||| || |
Sbjct 837154 TGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCGG 837095
Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140
||||||| || || || | ||||||
Sbjct 837094 TCAAAGTCTTCACAAAAATTTGCAT 837070
Score = 122 bits (134), Expect = 2e-22
Identities = 148/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTAC 195001
||||||||| || || || ||||| |||| |||| || | || || || | |||||| |
Sbjct 837722 AGTGGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCGTCCTCCAACTGCTTGC 837664
Query 195002 CTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCT 195061
| || ||||| | || || |||||||| ||||||||||| ||||| || ||||| ||
Sbjct 837663 CAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCT 837604
Query 195062 TGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAG 195121
| |||||||||||||| || || || || |||||||| | ||||| || || | ||
Sbjct 837603 TCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAG 837544
Query 195122 TTTTTACGAACACTTGCAT 195140
| || || || | |||||
Sbjct 837543 TCTTGACAAAGATCTGCAT 837525
Score = 107 bits (118), Expect = 4e-18
Identities = 149/205 (73%), Gaps = 3/205 (1%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995
||| || || ||||| || || || ||||| |||| |||| || | || || || | ||
Sbjct 837500 GTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCGTCCTCCAACT 837442
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
|||| || || ||||| | || || |||||||| ||||||||||| ||||| || ||||
Sbjct 837441 GCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTT 837382
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115
| ||| |||||||| ||||| || || || || |||| ||| | ||||| || |
Sbjct 837381 TAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAA-GGTGATGGTCTTGCCAG 837323
Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140
| | ||| || || || | |||||
Sbjct 837322 TGAGAGTCTTGACAAAGATCTGCAT 837298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109157222598173
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |