Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5502 143 6e-29 seq22266 134 3e-26 seq20501 134 3e-26 seq22190 129 1e-24 >seq5502 Length=68615 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||||||||| || || || || ||||||| ||||| | |||||||| | ||| Sbjct 5843 GTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTGCGTCCATCTTCCAACTG 5902 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || ||||| ||||| || || ||||| || || || Sbjct 5903 CTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTT 5962 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||||||||| || || ||| ||||| | ||| | || ||||| || Sbjct 5963 GGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGACTTCCAAGGTGATGGTTTTTCCGGT 6022 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||||||| | |||||| Sbjct 6023 CAAGGTCTTTACGAAGATTTGCAT 6046 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| | ||| | |||||| ||||| || || || || ||||| |||| ||| || | Sbjct 6512 GAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCG 6571 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | |||||| || ||||| || || || || || ||||| ||||| || || Sbjct 6572 GCCATCTTCCAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTC 6631 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||| || ||| || || ||||||||||| || |||||||| || || Sbjct 6632 CTTATCCTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGAGT 6691 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| ||||| || |||||||| | |||||| Sbjct 6692 GATGGTTTTTCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| ||||| || || || || ||||| || | ||| || | |||||||| Sbjct 6977 AACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTC 7036 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| || ||||| || || || || || ||||| ||||| || || || || || Sbjct 7037 CAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTG 7096 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| || || ||||||||||| || ||| ||||| | ||| | ||||| Sbjct 7097 AATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCGACTTCCAAGGTGATGGTCTT 7156 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| || |||||||| | |||||| Sbjct 7157 TCCGGTCAAGGTCTTTACGAAGATTTGCAT 7186 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| | ||| | |||||| ||||| || || || || ||||| || | ||| || | Sbjct 6284 GAGTCGGAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCG 6343 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | ||||| || ||||| || || ||||| || ||||| || ||||| || Sbjct 6344 GCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATGCCCTC 6403 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || || ||| || || ||||||||||| || || || || || || Sbjct 6404 CTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAACCTCCAGCGT 6463 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || |||| || |||||||| | ||||| Sbjct 6464 AATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 6502 >seq22266 Length=384576 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || ||||| || || || ||||| || | || || | ||||| || Sbjct 109175 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCC 109234 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || ||||| |||||||| || ||||| || Sbjct 109235 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 109294 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || ||||| |||||||||||| ||||| || | ||| | ||||| Sbjct 109295 ATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTG 109354 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | |||||| Sbjct 109355 CCGGTGAGGGTTTTCACGAAAATTTGCAT 109383 >seq20501 Length=31302 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||||||||| || ||||| || || || | || || | |||||||| ||||| Sbjct 11140 GTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATCTTCCAGCTG 11199 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||||||||| ||||||||||| ||||| || Sbjct 11200 CTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTT 11259 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || || || |||||||| ||| || ||||| || | ||||| || || Sbjct 11260 GGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGT 11319 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 11320 GAGGGTCTTAACGAAGATCTGCAT 11343 >seq22190 Length=927835 Score = 129 bits (142), Expect = 1e-24 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || || ||||| || || || ||||| |||| |||| || | |||||||| |||| Sbjct 837273 GTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCATCTTCCAGCT 837215 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 | || || |||||||| | ||| || |||||||| ||||| || || ||||| || || | Sbjct 837214 GTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCT 837155 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| |||||||||||||| || ||| || || || | || | ||||| || | Sbjct 837154 TGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCGG 837095 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || | |||||| Sbjct 837094 TCAAAGTCTTCACAAAAATTTGCAT 837070 Score = 122 bits (134), Expect = 2e-22 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTAC 195001 ||||||||| || || || ||||| |||| |||| || | || || || | |||||| | Sbjct 837722 AGTGGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCGTCCTCCAACTGCTTGC 837664 Query 195002 CTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCT 195061 | || ||||| | || || |||||||| ||||||||||| ||||| || ||||| || Sbjct 837663 CAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCT 837604 Query 195062 TGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAG 195121 | |||||||||||||| || || || || |||||||| | ||||| || || | || Sbjct 837603 TCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAG 837544 Query 195122 TTTTTACGAACACTTGCAT 195140 | || || || | ||||| Sbjct 837543 TCTTGACAAAGATCTGCAT 837525 Score = 107 bits (118), Expect = 4e-18 Identities = 149/205 (73%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || || ||||| || || || ||||| |||| |||| || | || || || | || Sbjct 837500 GTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCGTCCTCCAACT 837442 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || || ||||| | || || |||||||| ||||||||||| ||||| || |||| Sbjct 837441 GCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTT 837382 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| |||||||| ||||| || || || || |||| ||| | ||||| || | Sbjct 837381 TAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAA-GGTGATGGTCTTGCCAG 837323 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 | | ||| || || || | ||||| Sbjct 837322 TGAGAGTCTTGACAAAGATCTGCAT 837298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109157222598173