Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq5502 125 5e-24
seq22190 104 2e-17
seq20501 104 2e-17
seq22266 89.7 3e-13
>seq5502
Length=68615
Score = 125 bits (138), Expect = 5e-24
Identities = 156/212 (74%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||||| ||| ||| ||||| ||||| ||||| |||||| ||||| |||| ||
Sbjct 6065 AACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTC 6124
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| || |||||||| || || || ||||| ||| | || | |||||||||||
Sbjct 6125 AAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 6184
Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949
||||| || || || || |||| || | ||| || || | ||| ||||||
Sbjct 6185 GATCTTGGCCTTCAC--ATTCTCGATCGTGTCGGATGGCTCCACCTCAAGGGTAATGGTT 6242
Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || || |||||||| ||||| |||||
Sbjct 6243 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6274
Score = 123 bits (136), Expect = 2e-23
Identities = 157/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| ||| ||| ||||| ||||| ||||| |||||| ||||| |||| ||
Sbjct 7206 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCA 7265
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || |||||||| || || || ||||||||| | || | |||||||| || |
Sbjct 7266 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGA 7325
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| || || || || |||| || | ||| || || | || ||||| |
Sbjct 7326 ATCTTGGCCTTTAC--ATTCTCGATCGTATCGGAAGGCTCCACCTCCAAAGTAATGGTCT 7383
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
| || || | |||||||||||||||||||| ||
Sbjct 7384 TGCCAGTCAATGTCTTCACAAAGATCTGCATTTT 7417
Score = 113 bits (124), Expect = 3e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||||| ||| ||| ||||| ||||| |||||||||||| | || |||| ||
Sbjct 6293 AACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTC 6352
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| || ||||| || || || || |||||||| ||| | || | |||||||||||
Sbjct 6353 CAATTGCTTTCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATGCCCTCCTTGTCCTG 6412
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||||| || || | | || | || || |||||| || | || ||||| ||
Sbjct 6413 GATCTTGGCCTTCACATTTTCAATGGTGTCGGAGGGCTCAACCTCCAGCGTAATGGTCTT 6472
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || ||||| || |||||||||||
Sbjct 6473 GCCAGTCAGGGTCTTTACGAAGATCTGCAT 6502
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||||| ||| ||| ||||| ||||| ||||| |||||| | || |||| ||
Sbjct 6521 AACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTC 6580
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| ||| ||||| || || || || || ||||| ||| | || | |||||||| ||
Sbjct 6581 CAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTG 6640
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
|||||| || || | | || | ||| | ||| || |||| || ||||||||
Sbjct 6641 AATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGCTCCACTTCGAGAGTGATGGTTTT 6700
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||| || | ||||| || ||||| |||||
Sbjct 6701 TCCGGTCAAGGTCTTTACGAAGATTTGCAT 6730
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||||| ||| ||| ||||| ||||| |||||||||||| | || |||| ||
Sbjct 6977 AACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTC 7036
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| ||| ||||| || || || || || ||||| ||| | || | |||||||| ||
Sbjct 7037 CAACTGCTTTCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTG 7096
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
|||||| || || | | || | ||| | || || || | ||| ||||| ||
Sbjct 7097 AATCTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCGACTTCCAAGGTGATGGTCTT 7156
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||| || | ||||| || ||||| |||||
Sbjct 7157 TCCGGTCAAGGTCTTTACGAAGATTTGCAT 7186
Score = 89.7 bits (98), Expect = 3e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| || ||||| |||||||| || || || | ||| |||| |||
Sbjct 5838 ACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAGAGTGCGTCCATCTTCC 5897
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||| || ||||| || || | || ||||| ||| | || | |||||||||||
Sbjct 5898 AACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 5957
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| || ||| | || | ||| || || || || | ||| |||||||||
Sbjct 5958 ATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGTTCGACTTCCAAGGTGATGGTTTTT 6017
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || | ||||| || ||||| |||||
Sbjct 6018 CCGGTCAAGGTCTTTACGAAGATTTGCAT 6046
Score = 89.7 bits (98), Expect = 3e-13
Identities = 150/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||||||||| || || || || ||||| || || || | | ||| | ||
Sbjct 6746 CAATACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGACAACGTACGTCCGTC 6805
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
||||| || || |||||||| |||| ||| ||||| ||| | || | |||||||||||
Sbjct 6806 CTCCAGTTGCTTGCCGGCAAAGATTAATCGCTGCTGATCTGGGGGAATACCCTCCTTGTC 6865
Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946
||||| || || || || |||| || | ||| || || | ||| |||
Sbjct 6866 CTGGATCTTGGCCTTCAC--ATTCTCGATCGTGTCGGATGGCTCGACCTCAAGGGTAATG 6923
Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| || || || |||||||| ||||| |||||
Sbjct 6924 GTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6958
>seq22190
Length=927835
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || || ||||| ||||| ||||| || | | | ||| |||| |||
Sbjct 837278 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCC 837219
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||||||||| || || | ||| ||||||||| | || | |||||||||||
Sbjct 837218 AGCTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 837159
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| || ||| | || | || | |||||| || | || ||||| ||
Sbjct 837158 ATCTTGGCCTTCACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTG 837099
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| || | |||||||||||| || ||||| ||
Sbjct 837098 CCGGTCAAAGTCTTCACAAAAATTTGCATGTT 837067
Score = 89.7 bits (98), Expect = 3e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| || | ||| || ||||| ||||| ||||| || | | | ||| | || |||
Sbjct 837733 ACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCC 837674
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||| || || ||||| || | || ||||||||| | || | || ||||||||
Sbjct 837673 AACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 837614
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| || || ||| | || | || || ||| || || | ||| ||||| ||
Sbjct 837613 ATTTTAGCCTTCACGTTCTCAATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTG 837554
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||||||||| ||||||||||||||
Sbjct 837553 CCAGTGAGAGTCTTGACAAAGATCTGCAT 837525
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/209 (69%), Gaps = 1/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || || ||||| ||||| ||||| || | | | ||| | || |||
Sbjct 837505 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCC 837446
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||| || || ||||| || | || ||||||||| | || | || ||||||||
Sbjct 837445 AACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 837386
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| || || ||| | || | || || ||| || || | ||| ||||| ||
Sbjct 837385 ATTTTAGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAA-GGTGATGGTCTTG 837327
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||||||||| ||||||||||||||
Sbjct 837326 CCAGTGAGAGTCTTGACAAAGATCTGCAT 837298
>seq20501
Length=31302
Score = 104 bits (114), Expect = 2e-17
Identities = 155/216 (72%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| || ||||||||||||||||| || ||| | || |||| |||
Sbjct 11135 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATCTTCC 11194
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || || || || || || ||||| ||| | || | || || ||||| |
Sbjct 11195 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGA 11254
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948
||||| |||||| || | ||||| | ||| | || || || | || |||||
Sbjct 11255 ATCTTGGCTTTGAC--AT--TTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGT 11310
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| |||||||| ||||| || ||||||||||| ||
Sbjct 11311 CTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 11346
>seq22266
Length=384576
Score = 89.7 bits (98), Expect = 3e-13
Identities = 139/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| |||||||| ||| | || |||| |||||||| || ||||| ||
Sbjct 109193 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 109252
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||| ||| | || | ||||||||||| ||||| || || ||
Sbjct 109253 ATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--AT 109310
Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| | ||| | ||| || || | ||| ||||| || || ||||| || ||
Sbjct 109311 --TCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTT 109368
Query 34967 CACAAAGATCTGCAT 34981
||| || || |||||
Sbjct 109369 CACGAAAATTTGCAT 109383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324543317265432
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