Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq8502 156 5e-33
seq1813 154 2e-32
>seq8502
Length=4749
Score = 156 bits (172), Expect = 5e-33
Identities = 949/1533 (62%), Gaps = 14/1533 (1%)
Strand=Plus/Plus
Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371
|||| | || || | || ||||| ||||| || |||| | | |||| || || | ||
Sbjct 1496 ATGATGGTTGACCACCTGGAATTCACCAGACAGAACTCGTCTGGTATAAATGTTCGTGGT 1555
Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431
||| || || | |||||| || ||||| | |||||||||||| || || |||||||| |
Sbjct 1556 ATAGGGCTCGAAAGATTCGTTGTTTCCCATAATTTGAGCAGTAGACGCAGTAGGCATAGG 1615
Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCA 47491
||||| | | | || | || || | |||| || || |||
Sbjct 1616 GGCAACAAGCAGGGAGTTCCGGACACCGTGCTTTTTGATGGACTCCTTTAGTTTTTGCCA 1675
Query 47492 ATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTAT 47551
|||||| || | | ||| | ||| | || || || ||||||||||| || |
Sbjct 1676 ATCCCACAGGTTCGTTGGCTGTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCAC 1735
Query 47552 CGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTC 47611
|| || | ||| || | ||| ||||| | | | || |||||||| || |||||
Sbjct 1736 GGGGCTTCCCTCATAGGTCTCATAGGGACCTTCGACCTGCGCCAGTTCACAGCTGGCTTC 1795
Query 47612 CAATGCACTATAATATATTGTTTCAAATATTTTTATGTTT--AGATTCCTTGCTTCTGAT 47669
|| |||| || || || ||||||||||| | || || | | | ||||||
Sbjct 1796 CAGGGCACCGTAGTAAATCGTTTCAAATATCTGC-TGATTCAAAAAGACCGGCTTCTTCA 1854
Query 47670 GATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCA 47729
|||| | || | || | || || || || |||||||| || ||
Sbjct 1855 CTTTCATATGGGAATCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACACCGATGCCC 1914
Query 47730 ATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCT 47789
| || | ||| | ||| || || || ||||| | ||||| ||| |||||
Sbjct 1915 ACGGGACGATGTCTCAAATTGGATTTCTTTGCCTCTGGGAGGGGATAAAAGTTGATATCA 1974
Query 47790 ATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAA-TTTATTAAAATC 47848
|| || || || ||| || ||| ||||| ||| | |||||
Sbjct 1975 ATTATCTTGTTGAGATTTTTGGTAACCGTCTTGGTAACTTC-CTTAAGTTTCTGGAAATC 2033
Query 47849 AAACTTGTTATT---TATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGC 47905
||| || || | | | |||||| | ||||| || || ||||| || || || || ||
Sbjct 2034 AAATTTTTTCTCGGGTGTGACAAACATGTTAAGAGCGATGGATGCCAGGTTGCACACTGC 2093
Query 47906 TACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGT 47965
| ||||| || | ||||| | ||||| | || | || | || || || ||
Sbjct 2094 AATCTCATCCGGCGAGGAATATTCAACGATTTCTGTGCACAAGTTGCTGCACTTAATGGT 2153
Query 47966 ACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGT 48025
|| | || || || || | |||| || || |||||| | |||||| | || |
Sbjct 2154 GCCAACGTTCTGCTGGTTGCTTTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGGTT 2213
Query 48026 TCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGC 48085
|||||||| | ||| || ||||| || | ||| | | | |||||| | | |
Sbjct 2214 GCCAGTTTCCACCTGCGACTCAATAATGGCAAACCACAAGGACTGAGCCTTGA---CCGT 2270
Query 48086 TC---TAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATA 48142
|| | || | || || ||||||||||| || | |||||| |||||||| || |
Sbjct 2271 TCGGTTCGCACGACCCTCTTGCTCGTATTTAGTGTACAGCTTCTCGAATTCATCGCCCCA 2330
Query 48143 CACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTT 48202
|||| | | || || |||| | || ||||||| ||||||| ||||| |
Sbjct 2331 GACATCGTGCAGGCCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTC 2390
Query 48203 TACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAG 48262
|| | |||| || | ||| ||||||||||| || ||| | ||| | | |
Sbjct 2391 GACGCGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATT 2450
Query 48263 TTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGG 48322
|| || |||||| | || | || ||||| ||||| || | | ||| | ||||| ||
Sbjct 2451 CTCCTCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGG 2510
Query 48323 TTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGC 48382
|| | || || || | |||| || || || || || ||||| | ||| | ||
Sbjct 2511 CTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCACCCTGATCCACATAGCGTGC 2570
Query 48383 AGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGA 48442
|||||| | || || | ||| || || | ||||| || | ||||| || || |
Sbjct 2571 CACATTGTTGAAGACCCTCAGCATGGGAACTAGGCCATTGGAAGTGCCATTCGTGCCGCA 2630
Query 48443 AATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTT 48502
|||| | | || | || | || | || | || || ||||||||| |||
Sbjct 2631 AATAGAGGTGCCTTTTGCCCGGATGCAATGAACATTCAGTCCAATGCCACCTGCCGATTT 2690
Query 48503 AGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562
|| || | || || ||| | | | | | || || || || ||| | ||||
Sbjct 2691 CGAGATCATGGCGCAGTGTTCCACCGATTTAAAGATGCCCTCGATCGAGTCAGCCGTCAT 2750
Query 48563 ATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGG 48622
| || || ||||| ||||| ||||| || || | | ||| | |||||
Sbjct 2751 GGTCAAAAGGAAACAGGAAGACAGCTGCGGGCGATTTGTGGCAGCGGCAAAAAGCGTTGG 2810
Query 48623 AGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTAT 48682
||||| || | || || ||| || || | || || ||||| | | | ||| ||
Sbjct 2811 CGATGCGTGGGTGAAGAATCGCTCAGACAAAAGGTTGTAGGTTTCCACGGCCGCATCAAT 2870
Query 48683 ATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742
|||| | ||| || ||||| | || ||||| ||||| | ||| || | || | ||
Sbjct 2871 ATCCTCTCCATGGATTCCTATTGCCACGCGCATCAACATGTGTTGCGGACGCTCGGCGAT 2930
Query 48743 TTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802
|| |||| | |||| ||||| || ||| | ||||| || ||||||||||||||
Sbjct 2931 CTTTCCATTTCTCTTCAGCAGATAAGAACGTTCGAGGGTTTTGAATCCAAAATAGTTGTA 2990
Query 48803 TGAAAAGTCGTTATCATTAATAATTGATGAATT 48835
||| || ||||| ||| || || |||||
Sbjct 2991 CCCAAAATCACGATCATAAATTATAGAGGAATT 3023
>seq1813
Length=4749
Score = 154 bits (170), Expect = 2e-32
Identities = 946/1531 (62%), Gaps = 11/1531 (1%)
Strand=Plus/Plus
Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371
|||| | || || | || ||||| ||||| || |||| | | |||| || || | ||
Sbjct 1496 ATGATGGTTGACCACCTGGAATTCACCAGACAGAACTCGTCTGGTATAAATGTTCGTGGT 1555
Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431
||| || || | |||||| || ||||| | |||||||||||| || || |||||||| |
Sbjct 1556 ATAGGGCTCGAAAGATTCGTTGTTTCCCATAATTTGAGCAGTAGACGCAGTAGGCATAGG 1615
Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCA 47491
||||| | | | || | || || | |||| || || |||
Sbjct 1616 GGCAACAAGCAGGGAGTTCCGGACACCGTGCTTTTTGATGGACTCCTTTAGTTTTTGCCA 1675
Query 47492 ATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTAT 47551
|||||| || | | ||| | ||| | || || || ||||||||||| || |
Sbjct 1676 ATCCCACAGGTTCGTTGGCTGTTTGTCCCACATGTCGTACTGCAGAATTCCTTTGCTCAC 1735
Query 47552 CGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTC 47611
|| || | ||| || | ||| ||||| | | | || |||||||| || |||||
Sbjct 1736 GGGGCTTCCCTCATAGGTCTCATAGGGACCTTCGACCTGCGCCAGTTCACAGCTGGCTTC 1795
Query 47612 CAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGA 47671
|| |||| || || || ||||||||||| | || | | | || |||
Sbjct 1796 CAGGGCACCGTAGTAAATCGTTTCAAATATCTGCTGATTCAAAAGACCGGCCTCTTCACT 1855
Query 47672 TTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAAT 47731
|||| | || | || | || || || || |||||||| || || |
Sbjct 1856 TTCATATGGGAATCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACACCGATGCCCAC 1915
Query 47732 TGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTAT 47791
|| | ||| | ||| || || || ||||| | ||||| ||| ||||| ||
Sbjct 1916 GGGACGATGTCTCAAATTGGATTTCTTTGCCTCTGGGAGGGGATAAAAGTTGATATCAAT 1975
Query 47792 AATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAA-TTTATTAAAATCAA 47850
|| || || ||| || ||| ||||| ||| | |||||||
Sbjct 1976 TATCTTGTTGAGATTTTTGGTAACCGTCTTGGTAACTTC-CTTAAGTTTCTGGAAATCAA 2034
Query 47851 ACTTGTTATT---TATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTA 47907
| || || | | | |||||| | ||||| || || ||||| || || || || || |
Sbjct 2035 ATTTTTTCTCGGGTGTGACAAACATGTTAAGAGCGATGGATGCCAGGTTGCACACTGCAA 2094
Query 47908 CCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTAC 47967
||||| || | ||||| | ||||| | || | || | || || || || |
Sbjct 2095 TCTCATCCGGCGAGGAATATTCAACGATTTCTGTGCACAAGTTGCTGCACTTAATGGTGC 2154
Query 47968 CCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTC 48027
| | || || || || | |||| || || |||||| | |||||| | || | |
Sbjct 2155 CAACGTTCTGCTGGTTGCTTTTCCTGTTGCAGGCATCCTTGAAGAGCATATACGGGTTGC 2214
Query 48028 CAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC 48087
||||||| | ||| || ||||| || | ||| | | | |||||| | | | ||
Sbjct 2215 CAGTTTCCACCTGCGACTCAATAATGGCAAACCACAAGGACTGAGCCTTGA---CCGTTC 2271
Query 48088 ---TAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACA 48144
| || | || || ||||||||||| || | |||||| |||||||| || | |
Sbjct 2272 GGTTCGCACGACCCTCTTGCTCGTATTTAGTGTACAGCTTCTCGAATTCATCGCCCCAGA 2331
Query 48145 CATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTA 48204
||| | | || || |||| | || ||||||| ||||||| ||||| | |
Sbjct 2332 CATCGTGCAGGCCCGGGCATTTGTGCGGGCACATCAGCGACCAATTCTCATTGGCCTCGA 2391
Query 48205 CTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTT 48264
| | |||| || | ||| ||||||||||| || ||| | ||| | | | |
Sbjct 2392 CGCGTTTCATGAAGAGATCGGGTATCCAAAGGGCGTAAAACAGATCGCGGGCGCGATTCT 2451
Query 48265 CTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTT 48324
| || |||||| | || | || ||||| ||||| || | | ||| | ||||| || |
Sbjct 2452 CCTCCTTGCCAGTGTTTTTCTTGAGTTCCAGAAACTCAAAGACATCCGAGTGCCAGGGCT 2511
Query 48325 CTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAG 48384
| | || || || | |||| || || || || || ||||| | ||| | ||
Sbjct 2512 CCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCACCCTGATCCACATAGCGTGCCA 2571
Query 48385 TATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAA 48444
|||||| | || || | ||| || || | ||||| || | ||||| || || |||
Sbjct 2572 CATTGTTGAAGACCCTCAGCATGGGAACTAGGCCATTGGAAGTGCCATTCGTGCCGCAAA 2631
Query 48445 TATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAG 48504
|| | | || | || | || | || | || || ||||||||| ||| |
Sbjct 2632 TAGAGGTGCCTTTTGCCCGGATGCAATGAACATTCAGTCCAATGCCACCTGCCGATTTCG 2691
Query 48505 ATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATAT 48564
| || | || || ||| | | | | | || || || || ||| | ||||
Sbjct 2692 AGATCATGGCGCAGTGTTCCACCGATTTAAAGATGCCCTCGATCGAGTCAGCCGTCATGG 2751
Query 48565 TTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAG 48624
| || || ||||| ||||| ||||| || || | | ||| | ||||| |
Sbjct 2752 TCAAAAGGAAACAGGAAGACAGCTGCGGGCGATTTGTGGCAGCGGCAAAAAGCGTTGGCG 2811
Query 48625 ATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATAT 48684
|||| || | || || ||| || || | || || ||||| | | | ||| ||||
Sbjct 2812 ATGCGTGGGTGAAGAATCGCTCAGACAAAAGGTTGTAGGTTTCCACGGCCGCATCAATAT 2871
Query 48685 CCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTT 48744
|| | ||| || ||||| | || ||||| ||||| | ||| || | || | || |
Sbjct 2872 CCTCTCCATGGATTCCTATTGCCACGCGCATCAACATGTGTTGCGGACGCTCGGCGATCT 2931
Query 48745 TGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATG 48804
| |||| | |||| ||||| || ||| | ||||| || ||||||||||||||
Sbjct 2932 TTCCATTTCTCTTCAGCAGATAAGAACGTTCGAGGGTTTTGAATCCAAAATAGTTGTACC 2991
Query 48805 AAAAGTCGTTATCATTAATAATTGATGAATT 48835
||| || ||||| ||| || || |||||
Sbjct 2992 CAAAATCACGATCATAAATTATAGAGGAATT 3022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561948465491160
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