Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22]
22,819 sequences; 197,375,704 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq22232 174 1e-38
seq22465 102 7e-17
>seq22232
Length=226448
Score = 174 bits (192), Expect = 1e-38
Identities = 339/496 (68%), Gaps = 10/496 (2%)
Strand=Plus/Plus
Query 29725 AAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCC 29784
||||| || | || || |||| | || ||| |||| |||| ||||||| |||
Sbjct 53755 AAGTCTTCGATGTCCTGCACCTGGCGCTTGATCACCAGTTTGGGGAAGGGTCGCGGCGTA 53814
Query 29785 CTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGG 29844
| || || || ||| | || || ||||||| ||| |||||||| | || || |
Sbjct 53815 CGCTTCAGTTGCTCCTTTAATGGGTCTACGTGATTCAGATAGACGTGGGTATCGCCAAAC 53874
Query 29845 GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGA 29904
||||| || || || || || | || || || || ||||| ||||||| ||||| ||
Sbjct 53875 GTGTGCACGAAGTCGCCAGGCTTCAGACCCGTAACATGAGCGATCATGTGAGTGAGAAGG 53934
Query 29905 GAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGC 29964
| |||| ||||||||||||||| || || || |||||||| | ||||||||| |||
Sbjct 53935 GCGTAGGAGGCGATGTTAAAGGGCACGCCCAGGCCCATGTCGGCGCTCCTCTGGTACAGC 53994
Query 29965 TGACACGAGAGCTCTCCGTCGC-TC------ACGTAAAACTGACACATGGTGTGGCACGG 30017
|| || ||||| || ||| ||| || ||||| ||||| | | |||||||||
Sbjct 53995 TGGCAGGAGAGTTCGCCG-CGCGTCTGGGAGACGTAGAACTGCGCTAGGCAGTGGCACGG 54053
Query 30018 AGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC 30077
|| || ||||| | |||| || ||||| || ||| ||| |||||||| ||
Sbjct 54054 CGGCAGCGCCATCTTCGGTATGTCTACTGGATTCCAAGCTGACATGATAATGCGCCTATC 54113
Query 30078 TTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 30137
|| || ||| ||||| ||| | | | ||| ||| || | ||| | || |
Sbjct 54114 CGAGGGATTCTTCTTGATGGTGTCGATTACCTGACGCAACTGGTCGATGCCCTTTCCAGT 54173
Query 30138 GTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACA 30196
||||| | | | || || | |||||||| || || |||| ||||||||| || ||||
Sbjct 54174 ATAGTCGTCCTCGCAGGTGC-CATACTCTGCGCCAAAGTGCCGCCACTGGAAACCATACA 54232
Query 30197 CCGGTCCCAGGTCTCC 30212
|||| ||||| || ||
Sbjct 54233 CCGGGCCCAGATCGCC 54248
>seq22465
Length=63631
Score = 102 bits (112), Expect = 7e-17
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 48423 TTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACG 48482
|| ||||| | ||||||||||||||| | ||| || |||||||| ||||| || ||
Sbjct 17349 TTGAACAGAACGACGCCGAGGTTGCCGCGGTAATCCTCATCCACCACACCGGCGCCCACA 17290
Query 48483 TCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGG 48542
|| || || || |||| |||||| ||||||| || ||||| | ||||||| ||||
Sbjct 17289 TCGATGAAGTTCTTCACGGCCAGTCCGGACCGTGGGGCCACACGGCCGTAGGAGCCCTCC 17230
Query 48543 GGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCC 48578
|| | || ||| |||||| ||||| || | ||||
Sbjct 17229 GGAACCTGCACCTGCAGGTCGGTCTTCACGATGGCC 17194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408503960763887
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |