Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq22232 174 1e-38 seq22465 102 7e-17 >seq22232 Length=226448 Score = 174 bits (192), Expect = 1e-38 Identities = 339/496 (68%), Gaps = 10/496 (2%) Strand=Plus/Plus Query 29725 AAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCC 29784 ||||| || | || || |||| | || ||| |||| |||| ||||||| ||| Sbjct 53755 AAGTCTTCGATGTCCTGCACCTGGCGCTTGATCACCAGTTTGGGGAAGGGTCGCGGCGTA 53814 Query 29785 CTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGG 29844 | || || || ||| | || || ||||||| ||| |||||||| | || || | Sbjct 53815 CGCTTCAGTTGCTCCTTTAATGGGTCTACGTGATTCAGATAGACGTGGGTATCGCCAAAC 53874 Query 29845 GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGA 29904 ||||| || || || || || | || || || || ||||| ||||||| ||||| || Sbjct 53875 GTGTGCACGAAGTCGCCAGGCTTCAGACCCGTAACATGAGCGATCATGTGAGTGAGAAGG 53934 Query 29905 GAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGC 29964 | |||| ||||||||||||||| || || || |||||||| | ||||||||| ||| Sbjct 53935 GCGTAGGAGGCGATGTTAAAGGGCACGCCCAGGCCCATGTCGGCGCTCCTCTGGTACAGC 53994 Query 29965 TGACACGAGAGCTCTCCGTCGC-TC------ACGTAAAACTGACACATGGTGTGGCACGG 30017 || || ||||| || ||| ||| || ||||| ||||| | | ||||||||| Sbjct 53995 TGGCAGGAGAGTTCGCCG-CGCGTCTGGGAGACGTAGAACTGCGCTAGGCAGTGGCACGG 54053 Query 30018 AGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC 30077 || || ||||| | |||| || ||||| || ||| ||| |||||||| || Sbjct 54054 CGGCAGCGCCATCTTCGGTATGTCTACTGGATTCCAAGCTGACATGATAATGCGCCTATC 54113 Query 30078 TTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 30137 || || ||| ||||| ||| | | | ||| ||| || | ||| | || | Sbjct 54114 CGAGGGATTCTTCTTGATGGTGTCGATTACCTGACGCAACTGGTCGATGCCCTTTCCAGT 54173 Query 30138 GTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACA 30196 ||||| | | | || || | |||||||| || || |||| ||||||||| || |||| Sbjct 54174 ATAGTCGTCCTCGCAGGTGC-CATACTCTGCGCCAAAGTGCCGCCACTGGAAACCATACA 54232 Query 30197 CCGGTCCCAGGTCTCC 30212 |||| ||||| || || Sbjct 54233 CCGGGCCCAGATCGCC 54248 >seq22465 Length=63631 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 48423 TTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACG 48482 || ||||| | ||||||||||||||| | ||| || |||||||| ||||| || || Sbjct 17349 TTGAACAGAACGACGCCGAGGTTGCCGCGGTAATCCTCATCCACCACACCGGCGCCCACA 17290 Query 48483 TCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGG 48542 || || || || |||| |||||| ||||||| || ||||| | ||||||| |||| Sbjct 17289 TCGATGAAGTTCTTCACGGCCAGTCCGGACCGTGGGGCCACACGGCCGTAGGAGCCCTCC 17230 Query 48543 GGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCC 48578 || | || ||| |||||| ||||| || | |||| Sbjct 17229 GGAACCTGCACCTGCAGGTCGGTCTTCACGATGGCC 17194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408503960763887